Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.

Term:4-pyridoxic acid
go back to main search page
Accession:CHEBI:17405 term browser browse the term
Definition:A methylpyridine that is 2-methylpyridine substituted by a hydroxy group at C-3, a carboxy group at C-4, and a hydroxymethyl group at C-5. It is the catabolic product of vitamin B6 and is excreted in the urine.
Synonyms:related_synonym: 2-methyl-3-hydroxy-4-carboxy-5-hydroxymethylpyridine;   3-hydroxy-5-(hydroxymethyl)-2-methyl-4-pyridinecarboxylic acid;   3-hydroxy-5-(hydroxymethyl)-2-methylisonicotinic acid;   3-hydroxy-5-(hydroxymethyl)-2-methylpyridine-4-carboxylic acid;   4-Pyridoxinsaeure;   4-pyridoxinecarboxylic acid;   4-pyridoxinic acid;   4-pyridoxylic acid;   Formula=C8H9NO4;   InChI=1S/C8H9NO4/c1-4-7(11)6(8(12)13)5(3-10)2-9-4/h2,10-11H,3H2,1H3,(H,12,13);   InChIKey=HXACOUQIXZGNBF-UHFFFAOYSA-N;   SMILES=Cc1ncc(CO)c(C(O)=O)c1O;   pyridoxic acid
 alt_id: CHEBI:1928;   CHEBI:20474
 xref: Beilstein:384006;   CAS:82-82-6;   Chemspider:6467;   FooDB:FDB021874;   HMDB:HMDB0000017;   KEGG:C00847;   KNApSAcK:C00052160
 xref_mesh: MESH:D011735
 xref: MetaCyc:CPD-1112;   PMID:11756060;   PMID:1462525;   PMID:14747687;   PMID:1783639;   PMID:17868768;   PMID:22770225;   PMID:23535534;   PMID:2580028;   PMID:28778380;   PMID:30845778;   PMID:32346589;   PMID:8505768;   Reaxys:384006
 cyclic_relationship: is_conjugate_acid_of CHEBI:30959


show annotations for term's descendants           Sort by:
 
4-pyridoxic acid term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col2a1 collagen type II alpha 1 chain multiple interactions EXP [COL2A1 protein co-treated with Freund's Adjuvant] results in decreased abundance of Pyridoxic Acid CTD PMID:24709313 NCBI chr 7:129,098,489...129,127,620
Ensembl chr 7:129,098,786...129,127,546
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19821
    role 19769
      biological role 19769
        biochemical role 19389
          vitamin (role) 13083
            water-soluble vitamin (role) 9638
              B vitamin 9453
                vitamin B6 31
                  4-pyridoxic acid 1
                    4-pyridoxolactone 0
Path 2
Term Annotations click to browse term
  CHEBI ontology 19821
    subatomic particle 19819
      composite particle 19819
        hadron 19819
          baryon 19819
            nucleon 19819
              atomic nucleus 19819
                atom 19819
                  main group element atom 19716
                    p-block element atom 19716
                      carbon group element atom 19640
                        carbon atom 19630
                          organic molecular entity 19630
                            organic group 18737
                              organic divalent group 18728
                                organodiyl group 18728
                                  carbonyl group 18675
                                    carbonyl compound 18675
                                      carboxylic acid 18373
                                        monocarboxylic acid 17636
                                          pyridinemonocarboxylic acid 402
                                            isonicotinic acid 168
                                              4-pyridoxic acid 1
                                                4-pyridoxolactone 0
paths to the root