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CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.

Term:allysine
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Accession:CHEBI:17027 term browser browse the term
Definition:An alpha-amino acid consisting of lysine having an oxo group in place of the side-chain amino group.
Synonyms:exact_synonym: 2-amino-6-oxohexanoic acid
 related_synonym: 2-Aminoadipate 6-semialdehyde;   2-amino-5-formylvaleric acid;   6-oxonorleucine;   Formula=C6H11NO3;   HCO-[CH2]3-CH(NH2)-COOH;   InChI=1S/C6H11NO3/c7-5(6(9)10)3-1-2-4-8/h4-5H,1-3,7H2,(H,9,10);   InChIKey=GFXYTQPNNXGICT-UHFFFAOYSA-N;   SMILES=[H]C(=O)CCCC(N)C(O)=O;   alpha-aminoadipic acid delta-semialdehyde;   alpha-aminoadipic delta-semialdehyde
 alt_id: CHEBI:11519;   CHEBI:13764;   CHEBI:2605
 xref: Beilstein:1857434;   CAS:1962-83-0;   KEGG:C01475
 xref_mesh: MESH:C000061
 cyclic_relationship: is_tautomer_of CHEBI:57988


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allysine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh7a1 aldehyde dehydrogenase 7 family, member A1 increases oxidation
affects binding
ISO ALDH7A1 protein results in increased oxidation of allysine
allysine binds to ALDH7A1 protein
CTD PMID:21185811 NCBI chr18:51,619,007...51,651,267
Ensembl chr18:51,619,007...51,651,267
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Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19773
    role 19723
      application 19413
        refrigerant 17474
          ammonia 17008
            organic amino compound 17007
              amino acid 14111
                alpha-amino acid 11596
                  non-proteinogenic alpha-amino acid 1558
                    allysine 1
                      L-allysine + 0
Path 2
Term Annotations click to browse term
  CHEBI ontology 19773
    subatomic particle 19771
      composite particle 19771
        hadron 19771
          baryon 19771
            nucleon 19771
              atomic nucleus 19771
                atom 19771
                  main group element atom 19665
                    p-block element atom 19665
                      carbon group element atom 19583
                        carbon atom 19573
                          organic molecular entity 19573
                            organic group 18603
                              organic divalent group 18594
                                organodiyl group 18594
                                  carbonyl group 18507
                                    carbonyl compound 18507
                                      carboxylic acid 18159
                                        amino acid 14111
                                          alpha-amino acid 11596
                                            non-proteinogenic alpha-amino acid 1558
                                              allysine 1
                                                L-allysine + 0
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