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CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.

Term:(R)-amygdalin
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Accession:CHEBI:17019 term browser browse the term
Definition:An amygdalin in which the stereocentre on the cyanohydrin function has R-configuration.
Synonyms:exact_synonym: (2R)-[(6-O-beta-D-glucopyranosyl-beta-D-glucopyranosyl)oxy](phenyl)acetonitrile
 related_synonym: (R)-Amygdaloside;   (R)-Laenitrile;   D(-)-mandelonitrile-beta-D-gentiobioside;   D-amygdalin;   D-mandelonitrile-beta-D-glucosido-6-beta-D-glucoside;   Formula=C20H27NO11;   InChI=1S/C20H27NO11/c21-6-10(9-4-2-1-3-5-9)30-20-18(28)16(26)14(24)12(32-20)8-29-19-17(27)15(25)13(23)11(7-22)31-19/h1-5,10-20,22-28H,7-8H2/t10-,11+,12+,13+,14+,15-,16-,17+,18+,19+,20+/m0/s1;   InChIKey=XUCIJNAGGSZNQT-JHSLDZJXSA-N;   SMILES=C(#N)[C@H](O[C@H]1[C@H](O)[C@@H](O)[C@H](O)[C@H](O1)CO[C@]2([C@H](O)[C@@H](O)[C@H](O)[C@H](O2)CO)[H])C3=CC=CC=C3
 alt_id: CHEBI:10997;   CHEBI:18681;   CHEBI:336
 xref: Beilstein:66856;   CAS:29883-15-6;   HMDB:HMDB0035030;   KEGG:C08325;   KNApSAcK:C00001437
 xref_mesh: MESH:D000678
 xref: MetaCyc:CPD-1125;   PMID:10670815;   PMID:12232058;   PMID:12372866;   PMID:12428943;   PMID:12975776;   PMID:16652960;   PMID:16880611;   PMID:17359643;   PMID:20191348;   PMID:25050339;   PMID:25237385;   PMID:26431391;   PMID:26719286;   PMID:27119432;   PMID:7092570;   Reaxys:66856;   Wikipedia:Amygdalin



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(R)-amygdalin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ptgs1 prostaglandin-endoperoxide synthase 1 multiple interactions ISO [peoniflorin co-treated with benzoylpaeoniflorin co-treated with Amygdalin] inhibits the reaction [Lipopolysaccharides results in increased expression of PTGS1 mRNA]; Amygdalin inhibits the reaction [Lipopolysaccharides results in increased expression of PTGS1 mRNA] CTD PMID:33149750 NCBI chr 3:19,584,015...19,605,589
Ensembl chr 3:19,584,015...19,605,586
JBrowse link
G Ptgs2 prostaglandin-endoperoxide synthase 2 multiple interactions ISO [peoniflorin co-treated with benzoylpaeoniflorin co-treated with Amygdalin] inhibits the reaction [Lipopolysaccharides results in increased expression of PTGS2 mRNA]; Amygdalin inhibits the reaction [Lipopolysaccharides results in increased expression of PTGS2 mRNA] CTD PMID:33149750 NCBI chr13:62,164,080...62,169,770
Ensembl chr13:62,163,932...62,172,188
JBrowse link

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Path 1
Term Annotations click to browse term
  CHEBI ontology 19740
    role 19713
      biological role 19711
        biochemical role 19429
          apoptosis inducer 13452
            (R)-amygdalin 2
Path 2
Term Annotations click to browse term
  CHEBI ontology 19740
    subatomic particle 19738
      composite particle 19738
        hadron 19738
          baryon 19738
            nucleon 19738
              atomic nucleus 19738
                atom 19738
                  main group element atom 19686
                    p-block element atom 19686
                      carbon group element atom 19631
                        carbon atom 19627
                          organic molecular entity 19627
                            heteroorganic entity 19384
                              organochalcogen compound 19176
                                organooxygen compound 19095
                                  carbohydrates and carbohydrate derivatives 14423
                                    carbohydrate 14423
                                      monosaccharide 4379
                                        aldose 2729
                                          aldohexose 2370
                                            glucose 2329
                                              D-glucose 2329
                                                D-glucopyranose 1769
                                                  beta-D-glucose 1628
                                                    beta-D-glucoside 1432
                                                      prunasin 2
                                                        amygdalin 2
                                                          (R)-amygdalin 2
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