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CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.

Term:(R)-amygdalin
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Accession:CHEBI:17019 term browser browse the term
Definition:An amygdalin in which the stereocentre on the cyanohydrin function has R-configuration.
Synonyms:exact_synonym: (2R)-[(6-O-beta-D-glucopyranosyl-beta-D-glucopyranosyl)oxy](phenyl)acetonitrile
 related_synonym: (R)-Amygdaloside;   (R)-Laenitrile;   D(-)-mandelonitrile-beta-D-gentiobioside;   D-amygdalin;   D-mandelonitrile-beta-D-glucosido-6-beta-D-glucoside;   Formula=C20H27NO11;   InChI=1S/C20H27NO11/c21-6-10(9-4-2-1-3-5-9)30-20-18(28)16(26)14(24)12(32-20)8-29-19-17(27)15(25)13(23)11(7-22)31-19/h1-5,10-20,22-28H,7-8H2/t10-,11+,12+,13+,14+,15-,16-,17+,18+,19+,20+/m0/s1;   InChIKey=XUCIJNAGGSZNQT-JHSLDZJXSA-N;   SMILES=C(#N)[C@H](O[C@H]1[C@H](O)[C@@H](O)[C@H](O)[C@H](O1)CO[C@]2([C@H](O)[C@@H](O)[C@H](O)[C@H](O2)CO)[H])C3=CC=CC=C3
 alt_id: CHEBI:10997;   CHEBI:18681;   CHEBI:336
 xref: Beilstein:66856;   CAS:29883-15-6;   HMDB:HMDB0035030;   KEGG:C08325;   KNApSAcK:C00001437
 xref_mesh: MESH:D000678
 xref: MetaCyc:CPD-1125;   PMID:10670815;   PMID:12232058;   PMID:12372866;   PMID:12428943;   PMID:12975776;   PMID:16652960;   PMID:16880611;   PMID:17359643;   PMID:20191348;   PMID:25050339;   PMID:25237385;   PMID:26431391;   PMID:26719286;   PMID:27119432;   PMID:7092570;   Reaxys:66856;   Wikipedia:Amygdalin


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(R)-amygdalin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ptgs1 prostaglandin-endoperoxide synthase 1 multiple interactions ISO [peoniflorin co-treated with benzoylpaeoniflorin co-treated with Amygdalin] inhibits the reaction [Lipopolysaccharides results in increased expression of PTGS1 mRNA]; Amygdalin inhibits the reaction [Lipopolysaccharides results in increased expression of PTGS1 mRNA] CTD PMID:33149750 NCBI chr 3:15,560,685...15,582,339
Ensembl chr 3:15,560,712...15,582,344
JBrowse link
G Ptgs2 prostaglandin-endoperoxide synthase 2 multiple interactions ISO [peoniflorin co-treated with benzoylpaeoniflorin co-treated with Amygdalin] inhibits the reaction [Lipopolysaccharides results in increased expression of PTGS2 mRNA]; Amygdalin inhibits the reaction [Lipopolysaccharides results in increased expression of PTGS2 mRNA] CTD PMID:33149750 NCBI chr13:67,351,230...67,356,920
Ensembl chr13:67,351,087...67,359,335
JBrowse link

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Path 1
Term Annotations click to browse term
  CHEBI ontology 19770
    role 19720
      biological role 19720
        biochemical role 19310
          apoptosis inducer 11015
            (R)-amygdalin 2
Path 2
Term Annotations click to browse term
  CHEBI ontology 19770
    subatomic particle 19768
      composite particle 19768
        hadron 19768
          baryon 19768
            nucleon 19768
              atomic nucleus 19768
                atom 19768
                  main group element atom 19662
                    p-block element atom 19662
                      carbon group element atom 19580
                        carbon atom 19571
                          organic molecular entity 19571
                            heteroorganic entity 19206
                              organochalcogen compound 18951
                                organooxygen compound 18877
                                  carbohydrates and carbohydrate derivatives 12259
                                    carbohydrate 12259
                                      monosaccharide 4187
                                        aldose 2558
                                          aldohexose 2200
                                            glucose 2162
                                              D-glucose 2162
                                                D-glucopyranose 1717
                                                  beta-D-glucose 1603
                                                    beta-D-glucoside 1411
                                                      prunasin 2
                                                        amygdalin 2
                                                          (R)-amygdalin 2
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