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CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.

Term:ADP-D-ribose
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Accession:CHEBI:16960 term browser browse the term
Definition:A nucleotide-sugar having ADP as the nucleotide fragment and D-ribofuranos-5-yl as the sugar component.
Synonyms:exact_synonym: adenosine 5'-[3-(D-ribofuranos-5-O-yl) dihydrogen diphosphate]
 related_synonym: (Rib5)ppA;   5-(adenosine 5'-pyrophosphoryl)-D-ribose;   A5'pp5Rib;   ADP ribose;   ADP-Rib;   ADP-riboses;   ADPribose;   Adenosine diphosphate ribose;   AdoPPRib;   D-ribofuranose, 5-5'-ester with adenosine 5'-(trihydrogen pyrophosphate);   Formula=C15H23N5O14P2;   InChI=1S/C15H23N5O14P2/c16-12-7-13(18-3-17-12)20(4-19-7)14-10(23)8(21)5(32-14)1-30-35(26,27)34-36(28,29)31-2-6-9(22)11(24)15(25)33-6/h3-6,8-11,14-15,21-25H,1-2H2,(H,26,27)(H,28,29)(H2,16,17,18)/t5-,6-,8-,9-,10-,11-,14-,15?/m1/s1;   InChIKey=SRNWOUGRCWSEMX-TYASJMOZSA-N;   SMILES=Nc1ncnc2n(cnc12)[C@@H]1O[C@H](COP(O)(=O)OP(O)(=O)OC[C@H]2OC(O)[C@H](O)[C@@H]2O)[C@@H](O)[C@H]1O;   adenosine 5'-(trihydrogen diphosphate), P'-5-ester with D-ribose;   adenosine 5'-diphosphoribose;   adenosine 5'-pyrophosphate, 5'-5-ester with D-ribofuranose;   ribose adenosinediphosphate
 alt_id: CHEBI:13231;   CHEBI:20850;   CHEBI:2351;   CHEBI:32889;   CHEBI:40752
 xref: Beilstein:1236193;   Beilstein:6081768;   CAS:20762-30-5;   KEGG:C00301
 xref_mesh: MESH:D000246
 cyclic_relationship: is_conjugate_acid_of CHEBI:57967



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ADP-D-ribose term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adprh ADP-ribosylarginine hydrolase increases hydrolysis ISO ADPRH protein results in increased hydrolysis of Adenosine Diphosphate Ribose metabolite CTD PMID:21498885 NCBI chr11:62,299,831...62,306,170
Ensembl chr11:62,299,793...62,306,931
JBrowse link
G Adprs ADP-ribosylserine hydrolase increases hydrolysis
multiple interactions
ISO ADPRS protein results in increased hydrolysis of Adenosine Diphosphate Ribose metabolite
Adenosine Diphosphate Ribose inhibits the reaction [ADPRS protein results in increased hydrolysis of O-Acetyl-ADP-Ribose]
CTD PMID:21498885 NCBI chr 5:138,614,022...138,619,296
Ensembl chr 5:138,614,022...138,619,296
JBrowse link
G Nos1 nitric oxide synthase 1 multiple interactions ISO NOS1 protein affects the reaction [1-Methyl-4-phenyl-1,2,3,6-tetrahydropyridine results in increased ribosylation of Adenosine Diphosphate Ribose] CTD PMID:10318960 NCBI chr12:38,615,111...38,795,492
Ensembl chr12:38,626,714...38,710,945
JBrowse link
G Trpm2 transient receptor potential cation channel, subfamily M, member 2 multiple interactions
increases activity
EXP
ISO
Adenosine Diphosphate Ribose promotes the reaction [TRPM2 protein results in increased transport of Calcium]; Clotrimazole inhibits the reaction [Adenosine Diphosphate Ribose promotes the reaction [TRPM2 protein results in increased transport of Calcium]]; Flufenamic Acid inhibits the reaction [Adenosine Diphosphate Ribose promotes the reaction [TRPM2 protein results in increased transport of Calcium]]
Adenosine Diphosphate Ribose results in increased activity of TRPM2 protein
2-aminoethoxydiphenyl borate inhibits the reaction [Adenosine Diphosphate Ribose results in increased activity of TRPM2 protein]; 4-amylcinnamoylanthranilic acid inhibits the reaction [Adenosine Diphosphate Ribose results in increased activity of TRPM2 protein]; 4-amylcinnamoylanthranilic acid inhibits the reaction [Cisplatin promotes the reaction [Adenosine Diphosphate Ribose results in increased activity of TRPM2 protein]]; 4-amylcinnamoylanthranilic acid inhibits the reaction [Eicosapentaenoic Acid promotes the reaction [Adenosine Diphosphate Ribose results in increased activity of TRPM2 protein]]; 4-amylcinnamoylanthranilic acid inhibits the reaction [Eicosapentaenoic Acid promotes the reaction [Cisplatin promotes the reaction [Adenosine Diphosphate Ribose results in increased activity of TRPM2 protein]]]; Cisplatin promotes the reaction [Adenosine Diphosphate Ribose results in increased activity of TRPM2 protein]; Copper Sulfate inhibits the reaction [Adenosine Diphosphate Ribose results in increased activity of TRPM2 protein]; Eicosapentaenoic Acid promotes the reaction [Adenosine Diphosphate Ribose results in increased activity of TRPM2 protein]; Eicosapentaenoic Acid promotes the reaction [Cisplatin promotes the reaction [Adenosine Diphosphate Ribose results in increased activity of TRPM2 protein]]; ferrous chloride inhibits the reaction [Adenosine Diphosphate Ribose results in increased activity of TRPM2 protein]; lead nitrate inhibits the reaction [Adenosine Diphosphate Ribose results in increased activity of TRPM2 protein]; Mercuric Chloride inhibits the reaction [Adenosine Diphosphate Ribose results in increased activity of TRPM2 protein]; Miconazole inhibits the reaction [Adenosine Diphosphate Ribose results in increased activity of TRPM2 protein]; Selenium Oxides inhibits the reaction [Adenosine Diphosphate Ribose results in increased activity of TRPM2 protein]
4-amylcinnamoylanthranilic acid inhibits the reaction [[Buthionine Sulfoximine co-treated with Adenosine Diphosphate Ribose] results in increased activity of TRPM2 protein]; 4-amylcinnamoylanthranilic acid inhibits the reaction [Adenosine Diphosphate Ribose results in increased activity of TRPM2 protein]; [Buthionine Sulfoximine co-treated with Adenosine Diphosphate Ribose] results in increased activity of TRPM2 protein; Glutathione inhibits the reaction [[Buthionine Sulfoximine co-treated with Adenosine Diphosphate Ribose] results in increased activity of TRPM2 protein]; Glutathione inhibits the reaction [Adenosine Diphosphate Ribose results in increased activity of TRPM2 protein]; TRPM2 protein promotes the reaction [Adenosine Diphosphate Ribose results in increased uptake of Calcium]
CTD PMID:18204483 PMID:20878536 PMID:21900507 PMID:22750002 PMID:33309544 More... NCBI chr20:10,703,568...10,753,189
Ensembl chr20:10,707,014...10,753,181
JBrowse link
cyclic ADP-beta-D-ribose term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd38 CD38 molecule decreases abundance ISO CD38 gene mutant form results in decreased abundance of Cyclic ADP-Ribose CTD PMID:23343681 NCBI chr14:67,172,062...67,212,328
Ensembl chr14:67,172,063...67,211,986
JBrowse link
G Homer1 homer scaffold protein 1 multiple interactions EXP HOMER1 protein alternative form inhibits the reaction [Cyclic ADP-Ribose promotes the reaction [RYR2 protein results in increased secretion of Calcium]] CTD PMID:12887973 NCBI chr 2:24,542,777...24,645,715
Ensembl chr 2:24,543,093...24,644,785
JBrowse link
G Ryr2 ryanodine receptor 2 multiple interactions EXP HOMER1 protein alternative form inhibits the reaction [Cyclic ADP-Ribose promotes the reaction [RYR2 protein results in increased secretion of Calcium]] CTD PMID:12887973 NCBI chr17:58,389,925...58,975,641
Ensembl chr17:58,389,925...58,975,142
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19863
    role 19835
      biological role 19833
        biochemical role 19540
          metabolite 19527
            fundamental metabolite 14444
              ADP 88
                ADP-D-ribose 7
                  2''-O-glutaryl-ADP-D-ribose 0
                  2''-O-malonyl-ADP-D-ribose 0
                  2''-O-succinyl-ADP-D-ribose 0
                  ADP-alpha-D-ribose + 0
                  ADP-beta-D-ribose + 3
                  L-glutamyl-5-poly(ADP-ribose) 0
                  N(4)-(ADP-ribosyl)-L-asparagine 0
                  N(omega)-(ADP-D-ribosyl)-L-arginine 0
                  N(tele)-(ADP-D-ribosyl)-L-histidyl(2-) residue 0
                  O-(ADP-ribosyl)-L-serine 0
                  S-(ADP-ribosyl)-L-cysteine + 0
                  poly-ADP-D-ribose 0
Path 2
Term Annotations click to browse term
  CHEBI ontology 19863
    subatomic particle 19861
      composite particle 19861
        hadron 19861
          baryon 19861
            nucleon 19861
              atomic nucleus 19861
                atom 19861
                  main group element atom 19807
                    p-block element atom 19807
                      chalcogen 19557
                        oxygen atom 19530
                          oxygen molecular entity 19530
                            hydroxides 19337
                              oxoacid 18770
                                pnictogen oxoacid 14901
                                  phosphorus oxoacid 14490
                                    phosphoric acids 13928
                                      phosphoric acid 13928
                                        phosphoric acid derivative 13833
                                          phosphate 13832
                                            organic phosphate 13832
                                              carbohydrate phosphate 1862
                                                phospho sugar 1708
                                                  aldose phosphate 1705
                                                    aldopentose phosphate 1697
                                                      ribose phosphate 1692
                                                        ribonucleotide 1654
                                                          purine ribonucleotide 1612
                                                            adenyl ribonucleotide 1304
                                                              adenosine phosphate 296
                                                                adenosine 5'-phosphate 295
                                                                  ADP 88
                                                                    ADP-sugar 7
                                                                      ADP-D-ribose 7
                                                                        2''-O-glutaryl-ADP-D-ribose 0
                                                                        2''-O-malonyl-ADP-D-ribose 0
                                                                        2''-O-succinyl-ADP-D-ribose 0
                                                                        ADP-alpha-D-ribose + 0
                                                                        ADP-beta-D-ribose + 3
                                                                        L-glutamyl-5-poly(ADP-ribose) 0
                                                                        N(4)-(ADP-ribosyl)-L-asparagine 0
                                                                        N(omega)-(ADP-D-ribosyl)-L-arginine 0
                                                                        N(tele)-(ADP-D-ribosyl)-L-histidyl(2-) residue 0
                                                                        O-(ADP-ribosyl)-L-serine 0
                                                                        S-(ADP-ribosyl)-L-cysteine + 0
                                                                        poly-ADP-D-ribose 0
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