Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References FTP Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) RatMine GViewer (Genome Viewer) Overgo Probe Designer ACP Haplotyper Genome Scanner
Aging & Age-Related Disease Cancer Cardiovascular Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Genetic Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS
Term:pyridoxine
go back to main search page
Accession:CHEBI:16709 term browser browse the term
Definition:A hydroxymethylpyridine with hydroxymethyl groups at positions 4 and 5, a hydroxy group at position 3 and a methyl group at position 2. The 4-methanol form of vitamin B6, it is converted intoto pyridoxal phosphate which is a coenzyme for synthesis of amino acids, neurotransmitters, sphingolipids and aminolevulinic acid.
Synonyms:exact_synonym: 4,5-bis(hydroxymethyl)-2-methylpyridin-3-ol
 related_synonym: 2-methyl-3-hydroxy-4,5-dihydroxymethylpyridine;   3-hydroxy-4,5-bis(hydroxymethyl)-2-methylpyridine;   3-hydroxy-4,5-dimethylol-alpha-picoline;   5-hydroxy-6-methyl-3,4-pyridinedimethanol;   Formula=C8H11NO3;   InChI=1S/C8H11NO3/c1-5-8(12)7(4-11)6(3-10)2-9-5/h2,10-12H,3-4H2,1H3;   InChIKey=LXNHXLLTXMVWPM-UHFFFAOYSA-N;   Pyridoxol;   SMILES=Cc1ncc(CO)c(CO)c1O;   vitamin B6
 alt_id: CHEBI:14981;   CHEBI:26429;   CHEBI:8671
 xref: Beilstein:139854 "Beilstein";   CAS:65-23-6 "ChemIDplus";   CAS:65-23-6 "KEGG COMPOUND";   CAS:65-23-6 "NIST Chemistry WebBook";   DrugBank:DB00165;   Drug_Central:2836 "DrugCentral";   Gmelin:563676 "Gmelin";   HMDB:HMDB0000239;   KEGG:C00314;   KEGG:D08454;   KNApSAcK:C00001551;   LINCS:LSM-5324
 xref_mesh: MESH:D011736
 xref: PMID:24035968 "Europe PMC";   PMID:2580028 "Europe PMC";   Reaxys:139854 "Reaxys";   Wikipedia:Pyridoxine

show annotations for term's descendants       view all columns           Sort by:
 
pyridoxine term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bax BCL2 associated X, apoptosis regulator JBrowse link 1 101,451,801 101,457,207 RGD:6480464
G Casp8 caspase 8 JBrowse link 9 65,614,142 65,662,624 RGD:6480464
G Ppargc1a PPARG coactivator 1 alpha JBrowse link 14 63,095,291 63,190,688 RGD:6480464
G Shmt1 serine hydroxymethyltransferase 1 JBrowse link 10 47,030,813 47,059,216 RGD:6480464
Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19716
    role 19663
      biological role 19661
        biochemical role 19179
          cofactor 15389
            pyridoxine 4
              5'-O-beta-D-glucosylpyridoxine 0
              pyridoxine 5'-phosphate 0
              pyridoxine hydrochloride 0
Path 2
Term Annotations click to browse term
  CHEBI ontology 19716
    subatomic particle 19712
      composite particle 19712
        hadron 19712
          baryon 19712
            nucleon 19712
              atomic nucleus 19712
                atom 19712
                  main group element atom 19598
                    p-block element atom 19598
                      carbon group element atom 19486
                        carbon atom 19480
                          organic molecular entity 19480
                            organic molecule 19402
                              organic cyclic compound 19158
                                organic heterocyclic compound 18245
                                  organic heteromonocyclic compound 16350
                                    pyridines 8327
                                      hydroxypyridine 62
                                        monohydroxypyridine 50
                                          pyridoxine 4
                                            5'-O-beta-D-glucosylpyridoxine 0
                                            pyridoxine 5'-phosphate 0
                                            pyridoxine hydrochloride 0
paths to the root

Contact Us |  About Us |  License CC BY 4.0 |  Legal Disclaimer |  © Medical College of Wisconsin
NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.