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CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.

Term:pyridoxine
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Accession:CHEBI:16709 term browser browse the term
Definition:A hydroxymethylpyridine with hydroxymethyl groups at positions 4 and 5, a hydroxy group at position 3 and a methyl group at position 2. The 4-methanol form of vitamin B6, it is converted intoto pyridoxal phosphate which is a coenzyme for synthesis of amino acids, neurotransmitters, sphingolipids and aminolevulinic acid.
Synonyms:exact_synonym: 4,5-bis(hydroxymethyl)-2-methylpyridin-3-ol
 related_synonym: 2-Methyl-3-hydroxy-4,5-dihydroxymethyl-pyridin;   2-methyl-3-hydroxy-4,5-bis(hydroxymethyl)pyridine;   2-methyl-3-hydroxy-4,5-di(hydroxymethyl)pyridine;   2-methyl-3-hydroxy-4,5-dihydroxymethylpyridine;   2-methyl-4,5-bis(hydroxymethyl)-3-hydroxypyridine;   2-methyl-4,5-dimethylol-pyridin-3-ol;   3-hydroxy-2-picoline-4,5-dimethanol;   3-hydroxy-4,5-bis(hydroxymethyl)-2-methylpyridine;   3-hydroxy-4,5-dimethylol-alpha-picoline;   4,5-bis(hydroxymethyl)-2-methyl-pyridin-3-ol;   5-hydroxy-6-methyl-3,4-pyridinedimethanol;   Formula=C8H11NO3;   InChI=1S/C8H11NO3/c1-5-8(12)7(4-11)6(3-10)2-9-5/h2,10-12H,3-4H2,1H3;   InChIKey=LXNHXLLTXMVWPM-UHFFFAOYSA-N;   Pyridoxol;   SMILES=CC1=C(O)C(CO)=C(CO)C=N1;   piridossina;   pyridoxina;   pyridoxinum;   pyridoxolum;   vitamin B6
 alt_id: CHEBI:14981;   CHEBI:26429;   CHEBI:8671
 xref: AGR:IND607198670;   Beilstein:139854;   CAS:65-23-6;   Chemspider:1025;   DrugBank:DB00165;   Drug_Central:2836;   FooDB:FDB000574;   Gmelin:563676;   HMDB:HMDB0000239;   KEGG:C00314;   KEGG:D08454;   KNApSAcK:C00001551;   LINCS:LSM-5324
 xref_mesh: MESH:D011736
 xref: MetaCyc:PYRIDOXINE;   PDBeChem:UEG;   PMID:10687314;   PMID:10894227;   PMID:11562405;   PMID:12640345;   PMID:12768081;   PMID:13046427;   PMID:15132238;   PMID:15369738;   PMID:15756083;   PMID:16236150;   PMID:16277693;   PMID:16690736;   PMID:17044573;   PMID:22932811;   PMID:24035968;   PMID:24601602;   PMID:2580028;   PMID:27113583;   PMID:2885064;   PMID:31093449;   PMID:32105687;   PMID:33549283;   PMID:33665688;   PMID:3710434;   PMID:559690;   PMID:6624427;   PMID:6801073;   PMID:9625217;   Reaxys:139854;   Wikipedia:Pyridoxine



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pyridoxine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bax BCL2 associated X, apoptosis regulator increases expression ISO Pyridoxine results in increased expression of BAX mRNA CTD PMID:28716455 NCBI chr 1:95,940,001...95,945,407
Ensembl chr 1:95,938,808...95,945,368
JBrowse link
G Casp8 caspase 8 increases expression ISO Pyridoxine results in increased expression of CASP8 mRNA CTD PMID:28716455 NCBI chr 9:60,263,863...60,312,542
Ensembl chr 9:60,264,075...60,312,542
JBrowse link
G Ppargc1a PPARG coactivator 1 alpha increases expression ISO
EXP
Pyridoxine results in increased expression of PPARGC1A mRNA CTD PMID:23056435 NCBI chr14:58,860,752...59,516,525
Ensembl chr14:58,861,144...59,512,656
JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 multiple interactions ISO Pyridoxine affects the expression of and affects the activity of SHMT1 protein CTD PMID:17482557 NCBI chr10:45,468,698...45,497,820
Ensembl chr10:45,468,700...45,497,820
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19800
    role 19751
      biological role 19751
        biochemical role 19368
          cofactor 15798
            pyridoxine 4
              5'-O-beta-D-glucosylpyridoxine 0
              pyridoxine 5'-phosphate 0
              pyridoxine hydrochloride 0
Path 2
Term Annotations click to browse term
  CHEBI ontology 19800
    subatomic particle 19799
      composite particle 19799
        hadron 19799
          baryon 19799
            nucleon 19799
              atomic nucleus 19799
                atom 19799
                  main group element atom 19698
                    p-block element atom 19698
                      carbon group element atom 19619
                        carbon atom 19609
                          organic molecular entity 19609
                            organic molecule 19549
                              organic cyclic compound 19343
                                organic heterocyclic compound 18584
                                  organic heteromonocyclic compound 17120
                                    pyridines 9156
                                      hydroxypyridine 82
                                        monohydroxypyridine 53
                                          pyridoxine 4
                                            5'-O-beta-D-glucosylpyridoxine 0
                                            pyridoxine 5'-phosphate 0
                                            pyridoxine hydrochloride 0
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