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ONTOLOGY REPORT - ANNOTATIONS


Term:spermidine
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Accession:CHEBI:16610 term browser browse the term
Definition:A triamine that is the 1,5,10-triaza derivative of decane.
Synonyms:related_synonym: 1,5,10-triazadecane;   4-azaoctamethylenediamine;   4-azaoctane-1,8-diamine;   Formula=C7H19N3;   InChI=1S/C7H19N3/c8-4-1-2-6-10-7-3-5-9/h10H,1-9H2;   InChIKey=ATHGHQPFGPMSJY-UHFFFAOYSA-N;   N-(3-aminopropyl)butane-1,4-diamine;   SMILES=NCCCCNCCCN;   Spermidin
 alt_id: CHEBI:15095;   CHEBI:15097;   CHEBI:26732;   CHEBI:26733;   CHEBI:45647;   CHEBI:9218
 xref: Beilstein:1698591;   CAS:124-20-9;   DrugBank:DB03566;   Gmelin:454510;   HMDB:HMDB0001257;   KEGG:C00315;   KNApSAcK:C00001431;   LINCS:LSM-37075
 xref_mesh: MESH:D013095
 xref: MetaCyc:SPERMIDINE;   PDBeChem:SPD;   PMID:22770225;   Reaxys:1698591;   Wikipedia:Spermidine
 cyclic_relationship: is_conjugate_base_of CHEBI:57834


show annotations for term's descendants       view all columns           Sort by:
 
spermidine term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adrb1 adrenergic receptor, beta 1 JBrowse link 19 56,722,117 56,725,150 RGD:6480464
G Adrb2 adrenergic receptor, beta 2 JBrowse link 18 62,177,713 62,179,981 RGD:6480464
G Aoc1 amine oxidase, copper-containing 1 JBrowse link 6 48,895,255 48,909,188 RGD:6480464
G Casp3 caspase 3 JBrowse link 8 46,617,291 46,639,698 RGD:6480464
G Col2a1 collagen, type II, alpha 1 JBrowse link 15 97,975,602 98,004,724 RGD:6480464
G Eif3b eukaryotic translation initiation factor 3, subunit B JBrowse link 5 140,419,305 140,443,358 RGD:6480464
G Fxyd2 FXYD domain-containing ion transport regulator 2 JBrowse link 9 45,399,709 45,410,278 RGD:6480464
G Gast gastrin JBrowse link 11 100,334,407 100,336,997 RGD:6480464
G Gclm glutamate-cysteine ligase, modifier subunit JBrowse link 3 122,245,487 122,267,215 RGD:6480464
G Gsta1 glutathione S-transferase, alpha 1 (Ya) JBrowse link 9 78,230,669 78,242,683 RGD:6480464
G Gstm1 glutathione S-transferase, mu 1 JBrowse link 3 108,012,250 108,017,979 RGD:6480464
G Nfe2l2 nuclear factor, erythroid derived 2, like 2 JBrowse link 2 75,675,513 75,704,663 RGD:6480464
G Nqo1 NAD(P)H dehydrogenase, quinone 1 JBrowse link 8 107,388,225 107,403,205 RGD:6480464
G Odc1 ornithine decarboxylase, structural 1 JBrowse link 12 17,544,808 17,551,502 RGD:6480464
G Sat1 spermidine/spermine N1-acetyl transferase 1 JBrowse link X 155,213,126 155,216,449 RGD:6480464
G Smox spermine oxidase JBrowse link 2 131,491,858 131,525,183 RGD:6480464
G Tia1 cytotoxic granule-associated RNA binding protein 1 JBrowse link 6 86,404,203 86,433,405 RGD:6480464
G Ugt1a6b UDP glucuronosyltransferase 1 family, polypeptide A6B JBrowse link 1 88,103,257 88,218,998 RGD:6480464
G Xiap X-linked inhibitor of apoptosis JBrowse link X 42,059,613 42,109,664 RGD:6480464
trypanothione term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Arg1 arginase, liver JBrowse link 10 24,915,207 24,927,470 RGD:6480464
trypanothione disulfide term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Arg1 arginase, liver JBrowse link 10 24,915,207 24,927,470 RGD:6480464

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 21269
    role 21253
      biological role 21251
        biochemical role 20298
          metabolite 20237
            fundamental metabolite 9835
              spermidine 20
                N(1),N(8)-bis(coumaroyl)spermidine 0
                N(1),N(8)-bis(sinapoyl)-spermidine 0
                N(1),N(8)-bis-(dihydrocaffeoyl)spermidine 0
                N(4)-aminopropylspermidine 0
                N(4)-bis(aminopropyl)spermidine(1+) 0
                N-(3-aminopropyl)but-2-ene-1,4-diamine + 0
                N-[(E)-4-aminobutylidene]propane-1,3-diamine 0
                N-caffeoylspermidine 0
                acetylspermidine + 0
                carboxyspermidine 0
                glutathionylspermidine 0
                mygalin 0
                spermidine alkaloid + 0
                spermidine hydroxycinnamic acid conjugate + 0
                trypanothione + 1
Path 2
Term Annotations click to browse term
  CHEBI ontology 21269
    subatomic particle 21265
      composite particle 21265
        hadron 21265
          baryon 21265
            nucleon 21265
              atomic nucleus 21265
                atom 21265
                  main group element atom 21134
                    main group molecular entity 21134
                      s-block molecular entity 20606
                        hydrogen molecular entity 20517
                          hydrides 19483
                            inorganic hydride 17592
                              pnictogen hydride 17543
                                nitrogen hydride 17357
                                  azane 17228
                                    ammonia 17227
                                      organic amino compound 17226
                                        polyamine 8102
                                          triamine 27
                                            spermidine 20
                                              N(1),N(8)-bis(coumaroyl)spermidine 0
                                              N(1),N(8)-bis(sinapoyl)-spermidine 0
                                              N(1),N(8)-bis-(dihydrocaffeoyl)spermidine 0
                                              N(4)-aminopropylspermidine 0
                                              N(4)-bis(aminopropyl)spermidine(1+) 0
                                              N-(3-aminopropyl)but-2-ene-1,4-diamine + 0
                                              N-[(E)-4-aminobutylidene]propane-1,3-diamine 0
                                              N-caffeoylspermidine 0
                                              acetylspermidine + 0
                                              carboxyspermidine 0
                                              glutathionylspermidine 0
                                              mygalin 0
                                              spermidine alkaloid + 0
                                              spermidine hydroxycinnamic acid conjugate + 0
                                              trypanothione + 1
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.