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ONTOLOGY REPORT - ANNOTATIONS


Term:spermidine
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Accession:CHEBI:16610 term browser browse the term
Definition:A triamine that is the 1,5,10-triaza derivative of decane.
Synonyms:related_synonym: 1,5,10-triazadecane;   4-azaoctamethylenediamine;   4-azaoctane-1,8-diamine;   Formula=C7H19N3;   InChI=1S/C7H19N3/c8-4-1-2-6-10-7-3-5-9/h10H,1-9H2;   InChIKey=ATHGHQPFGPMSJY-UHFFFAOYSA-N;   N-(3-aminopropyl)butane-1,4-diamine;   SMILES=NCCCCNCCCN;   Spermidin
 alt_id: CHEBI:15095;   CHEBI:15097;   CHEBI:26732;   CHEBI:26733;   CHEBI:45647;   CHEBI:9218
 xref: Beilstein:1698591;   CAS:124-20-9;   DrugBank:DB03566;   Gmelin:454510;   HMDB:HMDB0001257;   KEGG:C00315;   KNApSAcK:C00001431;   LINCS:LSM-37075
 xref_mesh: MESH:D013095
 xref: MetaCyc:SPERMIDINE;   PDBeChem:SPD;   PMID:22770225;   Reaxys:1698591;   Wikipedia:Spermidine
 cyclic_relationship: is_conjugate_base_of CHEBI:57834


show annotations for term's descendants       view all columns           Sort by:
 
spermidine term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ADRB1 adrenoceptor beta 1 JBrowse link 10 114,043,866 114,046,904 RGD:6480464
G ADRB2 adrenoceptor beta 2 JBrowse link 5 148,826,611 148,828,623 RGD:6480464
G AOC1 amine oxidase copper containing 1 JBrowse link 7 150,824,875 150,861,504 RGD:6480464
G CASP3 caspase 3 JBrowse link 4 184,627,696 184,649,475 RGD:6480464
G COL2A1 collagen type II alpha 1 chain JBrowse link 12 47,972,967 48,006,212 RGD:6480464
G EIF3B eukaryotic translation initiation factor 3 subunit B JBrowse link 7 2,354,086 2,380,745 RGD:6480464
G FXYD2 FXYD domain containing ion transport regulator 2 JBrowse link 11 117,820,057 117,828,089 RGD:6480464
G GAST gastrin JBrowse link 17 41,712,331 41,715,969 RGD:6480464
G GCLM glutamate-cysteine ligase modifier subunit JBrowse link 1 93,885,199 93,910,370 RGD:6480464
G GSTA5 glutathione S-transferase alpha 5 JBrowse link 6 52,831,742 52,846,095 RGD:6480464
G GSTM1 glutathione S-transferase mu 1 JBrowse link 1 109,687,817 109,693,745 RGD:6480464
G NFE2L2 nuclear factor, erythroid 2 like 2 JBrowse link 2 177,230,303 177,265,131 RGD:6480464
G NQO1 NAD(P)H quinone dehydrogenase 1 JBrowse link 16 69,709,401 69,726,560 RGD:6480464
G ODC1 ornithine decarboxylase 1 JBrowse link 2 10,439,968 10,448,327 RGD:6480464
G SAT1 spermidine/spermine N1-acetyltransferase 1 JBrowse link X 23,783,158 23,786,223 RGD:6480464
G SMOX spermine oxidase JBrowse link 20 4,148,779 4,187,747 RGD:6480464
G TIA1 TIA1 cytotoxic granule associated RNA binding protein JBrowse link 2 70,209,444 70,248,793 RGD:6480464
G UGT1A6 UDP glucuronosyltransferase family 1 member A6 JBrowse link 2 233,691,670 233,773,300 RGD:6480464
G XIAP X-linked inhibitor of apoptosis JBrowse link X 123,859,708 123,913,972 RGD:6480464
trypanothione term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ARG1 arginase 1 JBrowse link 6 131,573,226 131,584,329 RGD:6480464
trypanothione disulfide term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ARG1 arginase 1 JBrowse link 6 131,573,226 131,584,329 RGD:6480464

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 23841
    role 23728
      biological role 23691
        biochemical role 23010
          metabolite 22904
            fundamental metabolite 10114
              spermidine 19
                N(1),N(8)-bis(coumaroyl)spermidine 0
                N(1),N(8)-bis(sinapoyl)-spermidine 0
                N(1),N(8)-bis-(dihydrocaffeoyl)spermidine 0
                N(4)-aminopropylspermidine 0
                N(4)-bis(aminopropyl)spermidine(1+) 0
                N-(3-aminopropyl)but-2-ene-1,4-diamine + 0
                N-[(E)-4-aminobutylidene]propane-1,3-diamine 0
                N-caffeoylspermidine 0
                acetylspermidine + 0
                carboxyspermidine 0
                glutathionylspermidine 0
                mygalin 0
                spermidine alkaloid + 0
                spermidine hydroxycinnamic acid conjugate + 0
                trypanothione + 1
Path 2
Term Annotations click to browse term
  CHEBI ontology 23841
    subatomic particle 23792
      composite particle 23792
        hadron 23792
          baryon 23792
            nucleon 23792
              atomic nucleus 23792
                atom 23792
                  main group element atom 23610
                    main group molecular entity 23610
                      s-block molecular entity 22796
                        hydrogen molecular entity 22592
                          hydrides 20646
                            inorganic hydride 18785
                              pnictogen hydride 18747
                                nitrogen hydride 18449
                                  azane 18309
                                    ammonia 18308
                                      organic amino compound 18307
                                        polyamine 8721
                                          triamine 26
                                            spermidine 19
                                              N(1),N(8)-bis(coumaroyl)spermidine 0
                                              N(1),N(8)-bis(sinapoyl)-spermidine 0
                                              N(1),N(8)-bis-(dihydrocaffeoyl)spermidine 0
                                              N(4)-aminopropylspermidine 0
                                              N(4)-bis(aminopropyl)spermidine(1+) 0
                                              N-(3-aminopropyl)but-2-ene-1,4-diamine + 0
                                              N-[(E)-4-aminobutylidene]propane-1,3-diamine 0
                                              N-caffeoylspermidine 0
                                              acetylspermidine + 0
                                              carboxyspermidine 0
                                              glutathionylspermidine 0
                                              mygalin 0
                                              spermidine alkaloid + 0
                                              spermidine hydroxycinnamic acid conjugate + 0
                                              trypanothione + 1
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.