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ONTOLOGY REPORT - ANNOTATIONS


Term:pyridoxamine
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Accession:CHEBI:16410 term browser browse the term
Definition:A monohydroxypyridine that is pyridine substituted by a hydroxy group at position 3, an aminomethyl group at position 4, a hydroxymethyl group at position 5 and a methyl group at position 2. The 4-aminomethyl form of vitamin B6, it is used (in the form of the hydrochloride salt) for treatment of diabetic nephropathy.
Synonyms:related_synonym: 4-(AMINOMETHYL)-5-(HYDROXYMETHYL)-2-METHYLPYRIDIN-3-OL;   Formula=C8H12N2O2;   InChI=1S/C8H12N2O2/c1-5-8(12)7(2-9)6(4-11)3-10-5/h3,11-12H,2,4,9H2,1H3;   InChIKey=NHZMQXZHNVQTQA-UHFFFAOYSA-N;   PM;   SMILES=Cc1ncc(CO)c(CN)c1O
 alt_id: CHEBI:14978;   CHEBI:26426;   CHEBI:45228;   CHEBI:8669
 xref: Beilstein:6993 "Beilstein";   CAS:85-87-0 "ChemIDplus";   CAS:85-87-0 "KEGG COMPOUND";   Gmelin:774473 "Gmelin";   HMDB:HMDB0001431;   KEGG:C00534;   KNApSAcK:C00007504
 xref_mesh: MESH:D011733
 xref: MetaCyc:PYRIDOXAMINE;   PDBeChem:PXM;   PMID:18434162 "Europe PMC";   PMID:23504149 "Europe PMC";   PMID:23841818 "Europe PMC";   PMID:24094054 "Europe PMC";   PMID:2580028 "Europe PMC";   Reaxys:6993 "Reaxys";   Wikipedia:Pyridoxamine
 cyclic_relationship: is_conjugate_base_of CHEBI:57761


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pyridoxamine term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gsr glutathione-disulfide reductase JBrowse link 16 62,197,617 62,239,987 RGD:6480464
G Ptgs2 prostaglandin-endoperoxide synthase 2 JBrowse link 13 67,351,230 67,356,920 RGD:6480464
G Sod2 superoxide dismutase 2 JBrowse link 1 47,914,757 47,921,587 RGD:6480464
G Sphk1 sphingosine kinase 1 JBrowse link 10 105,498,728 105,504,401 RGD:6480464
G Tgfb1 transforming growth factor, beta 1 JBrowse link 1 82,480,875 82,497,196 RGD:6480464
G Tnf tumor necrosis factor JBrowse link 20 5,189,382 5,192,000 RGD:6480464

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19662
    role 19606
      chemical role 19126
        ligand 5728
          chelator 5711
            iron chelator 1172
              pyridoxamine 6
                pyridoxamine 5'-phosphate 0
Path 2
Term Annotations click to browse term
  CHEBI ontology 19662
    subatomic particle 19658
      composite particle 19658
        hadron 19658
          baryon 19658
            nucleon 19658
              atomic nucleus 19658
                atom 19658
                  main group element atom 19539
                    p-block element atom 19539
                      carbon group element atom 19422
                        carbon atom 19414
                          organic molecular entity 19414
                            organic molecule 19337
                              organic cyclic compound 19089
                                organic heterocyclic compound 18164
                                  organic heteromonocyclic compound 16261
                                    pyridines 8322
                                      hydroxypyridine 51
                                        monohydroxypyridine 50
                                          pyridoxamine 6
                                            pyridoxamine 5'-phosphate 0
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.