Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References FTP Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) RatMine GViewer (Genome Viewer) Overgo Probe Designer ACP Haplotyper Genome Scanner
Aging & Age-Related Disease Cancer Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.
Term:phytanic acid
go back to main search page
Accession:CHEBI:16285 term browser browse the term
Definition:A branched-chain saturated fatty acid consisting of hexadecanoic acid carrying methyl substituents at positions 3, 7, 11 and 15.
Synonyms:exact_synonym: 3,7,11,15-tetramethylhexadecanoic acid
 related_synonym: 3,7,11,15-Tetramethyl-hexadecansaeure;   3,7,11,15-tetramethyl-hexadecanoic acid;   Formula=C20H40O2;   InChI=1S/C20H40O2/c1-16(2)9-6-10-17(3)11-7-12-18(4)13-8-14-19(5)15-20(21)22/h16-19H,6-15H2,1-5H3,(H,21,22);   InChIKey=RLCKHJSFHOZMDR-UHFFFAOYSA-N;   SMILES=CC(C)CCCC(C)CCCC(C)CCCC(C)CC(O)=O
 alt_id: CHEBI:26111;   CHEBI:8189
 xref: Beilstein:1789963;   CAS:14721-66-5;   KEGG:C01607;   LIPID_MAPS_instance:LMFA01020251
 xref_mesh: MESH:D010831
 xref: PMID:12187408;   PMID:17956237;   PMID:9819701;   Reaxys:1789963
 cyclic_relationship: is_conjugate_acid_of CHEBI:37257

show annotations for term's descendants           Sort by:
 
phytanic acid term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fabp1 fatty acid binding protein 1, liver affects binding
multiple interactions
increases expression		 EXP Phytanic Acid binds to FABP1 protein
PPARA protein affects the reaction [Phytanic Acid results in increased expression of FABP1 mRNA]
Phytanic Acid results in increased expression of FABP1 mRNA; Phytanic Acid results in increased expression of FABP1 protein		 CTD PMID:10191295 NCBI chr 6:71,199,879...71,205,034
Ensembl chr 6:71,199,827...71,205,023 		JBrowse link
G Ppara peroxisome proliferator activated receptor alpha multiple interactions
affects binding		 EXP
ISO		 PPARA protein affects the reaction [Phytanic Acid results in increased expression of FABP1 mRNA]
Phytanic Acid binds to PPARA protein		 CTD PMID:10191295 PMID:23843199 NCBI chr15:85,734,910...85,806,851
Ensembl chr15:85,734,983...85,802,819 		JBrowse link
G Ppard peroxisome proliferator activator receptor delta affects binding ISO Phytanic Acid binds to PPARB protein CTD PMID:23843199 NCBI chr17:28,232,754...28,301,469
Ensembl chr17:28,232,700...28,301,474 		JBrowse link
G Pparg peroxisome proliferator activated receptor gamma affects binding ISO Phytanic Acid binds to PPARG protein CTD PMID:23843199 NCBI chr 6:115,360,879...115,490,404
Ensembl chr 6:115,360,951...115,490,399 		JBrowse link
G Rxrb retinoid X receptor beta affects binding ISO Phytanic Acid binds to RXRB protein CTD PMID:11939783 NCBI chr17:34,031,812...34,038,403
Ensembl chr17:34,031,812...34,038,399 		JBrowse link
G Scp2 sterol carrier protein 2, liver affects degradation EXP SCP2 protein affects the degradation of Phytanic Acid CTD PMID:10191295 NCBI chr 4:108,043,830...108,144,971
Ensembl chr 4:108,043,839...108,144,998 		JBrowse link
2-hydroxyphytanic acid term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rxra retinoid X receptor alpha affects binding ISO 2-hydroxyphytanic acid binds to RXRA protein CTD PMID:23843199 NCBI chr 2:27,676,445...27,763,319
Ensembl chr 2:27,676,440...27,762,957 		JBrowse link
G Rxrb retinoid X receptor beta affects binding ISO 2-hydroxyphytanic acid binds to RXRB protein CTD PMID:23843199 NCBI chr17:34,031,812...34,038,403
Ensembl chr17:34,031,812...34,038,399 		JBrowse link
G Rxrg retinoid X receptor gamma affects binding ISO 2-hydroxyphytanic acid binds to RXRG protein CTD PMID:23843199 NCBI chr 1:167,598,362...167,639,623
Ensembl chr 1:167,598,384...167,639,623 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 21549
    role 21527
      biological role 21525
        biochemical role 20689
          metabolite 20639
            eukaryotic metabolite 20487
              plant metabolite 18531
                hexadecanoic acid 535
                  phytanic acid 8
                    2-hydroxyphytanic acid + 3
                    2-oxophytanic acid 0
                    omega-hydroxyphytanic acid 0
                    phytanoyl-CoA + 0
Path 2
Term Annotations click to browse term
  CHEBI ontology 21549
    subatomic particle 21534
      composite particle 21534
        hadron 21534
          baryon 21534
            nucleon 21534
              atomic nucleus 21534
                atom 21534
                  main group element atom 21437
                    p-block element atom 21437
                      carbon group element atom 21227
                        carbon atom 21124
                          organic molecular entity 21124
                            organic group 19557
                              organic divalent group 19547
                                organodiyl group 19547
                                  carbonyl group 19528
                                    carbonyl compound 19528
                                      carboxylic acid 19116
                                        monocarboxylic acid 18392
                                          fatty acid 16584
                                            saturated fatty acid 16560
                                              straight-chain saturated fatty acid 15902
                                                hexadecanoic acid 535
                                                  phytanic acid 8
                                                    2-hydroxyphytanic acid + 3
                                                    2-oxophytanic acid 0
                                                    omega-hydroxyphytanic acid 0
                                                    phytanoyl-CoA + 0
paths to the root