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CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.

Term:phytanic acid
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Accession:CHEBI:16285 term browser browse the term
Definition:A branched-chain saturated fatty acid consisting of hexadecanoic acid carrying methyl substituents at positions 3, 7, 11 and 15.
Synonyms:related_synonym: 3,7,11,15-Tetramethyl-hexadecansaeure;   3,7,11,15-Tetramethylhexadecanoic acid;   3,7,11,15-tetramethyl hexadecanoic acid;   Formula=C20H40O2;   InChI=1S/C20H40O2/c1-16(2)9-6-10-17(3)11-7-12-18(4)13-8-14-19(5)15-20(21)22/h16-19H,6-15H2,1-5H3,(H,21,22);   InChIKey=RLCKHJSFHOZMDR-UHFFFAOYSA-N;   SMILES=CC(C)CCCC(C)CCCC(C)CCCC(C)CC(O)=O
 alt_id: CHEBI:26111;   CHEBI:8189
 xref: Beilstein:1789963;   CAS:14721-66-5;   KEGG:C01607;   LIPID_MAPS_instance:LMFA01020251
 xref_mesh: MESH:D010831
 xref: PMID:12187408;   PMID:17956237;   PMID:9819701;   Reaxys:1789963
 cyclic_relationship: is_conjugate_acid_of CHEBI:37257


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phytanic acid term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fabp1 fatty acid binding protein 1 affects binding
multiple interactions
increases expression
ISO Phytanic Acid binds to FABP1 protein
PPARA protein affects the reaction [Phytanic Acid results in increased expression of FABP1 mRNA]
Phytanic Acid results in increased expression of FABP1 mRNA; Phytanic Acid results in increased expression of FABP1 protein
CTD PMID:10191295 NCBI chr 4:99,063,181...99,066,957
Ensembl chr 4:99,063,181...99,066,954
JBrowse link
G Ppara peroxisome proliferator activated receptor alpha multiple interactions
affects binding
ISO PPARA protein affects the reaction [Phytanic Acid results in increased expression of FABP1 mRNA]
Phytanic Acid binds to PPARA protein
CTD PMID:10191295, PMID:23843199 NCBI chr 7:126,618,872...126,687,282
Ensembl chr 7:126,619,196...126,681,752
JBrowse link
G Ppard peroxisome proliferator-activated receptor delta affects binding ISO Phytanic Acid binds to PPARB protein CTD PMID:23843199 NCBI chr20:7,818,289...7,883,482
Ensembl chr20:7,818,289...7,885,333
JBrowse link
G Pparg peroxisome proliferator-activated receptor gamma affects binding ISO Phytanic Acid binds to PPARG protein CTD PMID:23843199 NCBI chr 4:147,274,055...147,399,383
Ensembl chr 4:147,274,107...147,399,380
JBrowse link
G Rxrb retinoid X receptor beta affects binding ISO Phytanic Acid binds to RXRB protein CTD PMID:11939783 NCBI chr20:3,822,673...3,829,138
Ensembl chr20:3,823,042...3,829,140
JBrowse link
G Scp2 sterol carrier protein 2 affects degradation ISO SCP2 protein affects the degradation of Phytanic Acid CTD PMID:10191295 NCBI chr 5:127,647,934...127,735,703
Ensembl chr 5:127,620,274...127,735,739
JBrowse link
2-hydroxyphytanic acid term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rxra retinoid X receptor alpha affects binding ISO 2-hydroxyphytanic acid binds to RXRA protein CTD PMID:23843199 NCBI chr 3:6,272,560...6,295,354
Ensembl chr 3:6,211,789...6,295,908
JBrowse link
G Rxrb retinoid X receptor beta affects binding ISO 2-hydroxyphytanic acid binds to RXRB protein CTD PMID:23843199 NCBI chr20:3,822,673...3,829,138
Ensembl chr20:3,823,042...3,829,140
JBrowse link
G Rxrg retinoid X receptor gamma affects binding ISO 2-hydroxyphytanic acid binds to RXRG protein CTD PMID:23843199 NCBI chr13:85,818,473...85,868,555
Ensembl chr13:85,818,427...85,868,552
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19785
    role 19732
      biological role 19732
        biochemical role 19281
          metabolite 19262
            eukaryotic metabolite 18906
              plant metabolite 17359
                hexadecanoic acid 517
                  phytanic acid 8
                    2-hydroxyphytanic acid + 3
                    2-oxophytanic acid 0
                    omega-hydroxyphytanic acid 0
                    phytanoyl-CoA + 0
Path 2
Term Annotations click to browse term
  CHEBI ontology 19785
    subatomic particle 19782
      composite particle 19782
        hadron 19782
          baryon 19782
            nucleon 19782
              atomic nucleus 19782
                atom 19782
                  main group element atom 19670
                    p-block element atom 19670
                      carbon group element atom 19572
                        carbon atom 19561
                          organic molecular entity 19561
                            organic group 18493
                              organic divalent group 18486
                                organodiyl group 18486
                                  carbonyl group 18389
                                    carbonyl compound 18389
                                      carboxylic acid 18060
                                        monocarboxylic acid 17406
                                          fatty acid 15844
                                            saturated fatty acid 15811
                                              straight-chain saturated fatty acid 15226
                                                hexadecanoic acid 517
                                                  phytanic acid 8
                                                    2-hydroxyphytanic acid + 3
                                                    2-oxophytanic acid 0
                                                    omega-hydroxyphytanic acid 0
                                                    phytanoyl-CoA + 0
paths to the root

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