Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:palmatine
go back to main search page
Accession:CHEBI:16096 term browser browse the term
Definition:A berberine alkaloid that has formula C21H22NO4.
Synonyms:exact_synonym: 2,3,9,10-tetramethoxy-5,6-dihydroisoquino[3,2-a]isoquinolinium
 related_synonym: 5,6-Dihydro-2,3,9,10-tetramethoxydibenzo[a,g]quinolizinium;   7,8,13,13a-tetrahydro-2,3,9,10-tetramethoxyberbinium;   Formula=C21H22NO4;   InChI=1S/C21H22NO4/c1-23-18-6-5-13-9-17-15-11-20(25-3)19(24-2)10-14(15)7-8-22(17)12-16(13)21(18)26-4/h5-6,9-12H,7-8H2,1-4H3/q+1;   InChIKey=QUCQEUCGKKTEBI-UHFFFAOYSA-N;   O,O-dimethyldemethyleneberberine;   SMILES=COc1cc2CC[n+]3cc4c(OC)c(OC)ccc4cc3-c2cc1OC;   berbericinine
 alt_id: CHEBI:14728;   CHEBI:25833;   CHEBI:7895
 xref: Beilstein:1555498 "ChemIDplus";   CAS:3486-67-7 "ChemIDplus";   CAS:3486-67-7 "KEGG COMPOUND";   KEGG:C05315;   KNApSAcK:C00001898;   KNApSAcK:C00027159;   LINCS:LSM-6625
 xref_mesh: MESH:C005413


show annotations for term's descendants       view all columns           Sort by:
 
palmatine term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abcb1a ATP binding cassette subfamily B member 1A JBrowse link 4 22,339,829 22,517,642 RGD:6480464
G Abcb1b ATP-binding cassette, subfamily B (MDR/TAP), member 1B JBrowse link 4 22,225,123 22,307,577 RGD:6480464
G Ahr aryl hydrocarbon receptor JBrowse link 6 54,963,990 55,001,806 RGD:6480464
G Birc5 baculoviral IAP repeat-containing 5 JBrowse link 10 106,856,097 106,864,419 RGD:6480464
G Ccl2 C-C motif chemokine ligand 2 JBrowse link 10 69,412,065 69,413,863 RGD:6480464
G Ccl3 C-C motif chemokine ligand 3 JBrowse link 10 70,869,516 70,871,066 RGD:6480464
G Ccl4 C-C motif chemokine ligand 4 JBrowse link 10 70,870,926 70,886,357 RGD:6480464
G Ccl5 C-C motif chemokine ligand 5 JBrowse link 10 70,739,764 70,744,303 RGD:6480464
G Cyp1a1 cytochrome P450, family 1, subfamily a, polypeptide 1 JBrowse link 8 62,472,087 62,478,122 RGD:6480464
G H2ax H2A.X variant histone JBrowse link 8 48,665,652 48,666,981 RGD:6480464
G Il6r interleukin 6 receptor JBrowse link 2 189,196,180 189,255,987 RGD:6480464
G Top1 DNA topoisomerase I JBrowse link 3 156,635,688 156,717,686 RGD:6480464
G Vegfa vascular endothelial growth factor A JBrowse link 9 17,340,341 17,355,681 RGD:6480464
tetrahydropalmatine term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abcf1 ATP binding cassette subfamily F member 1 JBrowse link 20 3,309,914 3,322,828 RGD:6480464
G Acbd3 acyl-CoA binding domain containing 3 JBrowse link 13 99,004,942 99,035,520 RGD:6480464
G Acot9 acyl-CoA thioesterase 9 JBrowse link X 43,543,069 43,592,200 RGD:6480464
G Aldh5a1 aldehyde dehydrogenase 5 family, member A1 JBrowse link 17 42,133,076 42,159,413 RGD:6480464
G Ap2a1 adaptor related protein complex 2 subunit alpha 1 JBrowse link 1 100,896,582 100,926,443 RGD:6480464
G Arhgap1 Rho GTPase activating protein 1 JBrowse link 3 80,555,196 80,576,881 RGD:6480464
G Arih1 ariadne RBR E3 ubiquitin protein ligase 1 JBrowse link 8 64,166,359 64,268,555 RGD:6480464
G Arpc3 actin related protein 2/3 complex, subunit 3 JBrowse link 12 39,653,951 39,667,817 RGD:6480464
G Arpp19 cAMP-regulated phosphoprotein 19 JBrowse link 8 81,949,577 81,972,054 RGD:6480464
G Atad3a ATPase family, AAA domain containing 3A JBrowse link 5 173,189,590 173,209,809 RGD:6480464
G Atp2b1 ATPase plasma membrane Ca2+ transporting 1 JBrowse link 7 41,114,606 41,223,138 RGD:6480464
G Bad BCL2-associated agonist of cell death JBrowse link 1 222,198,516 222,207,459 RGD:6480464
G Bax BCL2 associated X, apoptosis regulator JBrowse link 1 101,451,801 101,457,207 RGD:6480464
G Bcar1 BCAR1 scaffold protein, Cas family member JBrowse link 19 43,932,543 43,967,452 RGD:6480464
G Bcl2 BCL2, apoptosis regulator JBrowse link 13 26,605,426 26,769,374 RGD:6480464
G Bzw1 basic leucine zipper and W2 domains 1 JBrowse link 9 65,279,675 65,293,471 RGD:6480464
G Cald1 caldesmon 1 JBrowse link 4 62,103,948 62,291,375 RGD:6480464
G Calu calumenin JBrowse link 4 56,625,611 56,653,112 RGD:6480464
G Casp3 caspase 3 JBrowse link 16 48,845,011 48,863,249 RGD:6480464
G Cavin3 caveolae associated protein 3 JBrowse link 1 170,317,099 170,318,688 RGD:6480464
G Cc2d1b coiled-coil and C2 domain containing 1B JBrowse link 5 128,215,711 128,229,762 RGD:6480464
G Ckap5 cytoskeleton associated protein 5 JBrowse link 3 80,424,320 80,526,583 RGD:6480464
G Clip1 CAP-GLY domain containing linker protein 1 JBrowse link 12 38,345,203 38,452,650 RGD:6480464
G Coa6 cytochrome c oxidase assembly factor 6 JBrowse link 19 59,327,328 59,333,706 RGD:6480464
G Coasy Coenzyme A synthase JBrowse link 10 88,992,413 88,996,677 RGD:6480464
G Cops2 COP9 signalosome subunit 2 JBrowse link 3 118,109,394 118,137,125 RGD:6480464
G Cops3 COP9 signalosome subunit 3 JBrowse link 10 46,182,680 46,206,083 RGD:6480464
G Cox6c cytochrome c oxidase subunit 6C JBrowse link 7 74,723,177 74,735,650 RGD:6480464
G Cpt1a carnitine palmitoyltransferase 1A JBrowse link 1 218,568,157 218,629,679 RGD:6480464
G Crip2 cysteine-rich protein 2 JBrowse link 6 137,953,545 137,958,491 RGD:6480464
G Cryz crystallin zeta JBrowse link 2 260,884,315 260,911,827 RGD:6480464
G Csde1 cold shock domain containing E1 JBrowse link 2 205,525,194 205,552,987 RGD:6480464
G Cstb cystatin B JBrowse link 20 10,966,357 10,968,399 RGD:6480464
G Cyp1a2 cytochrome P450, family 1, subfamily a, polypeptide 2 JBrowse link 8 62,451,360 62,458,244 RGD:6480464
G Dcaf7 DDB1 and CUL4 associated factor 7 JBrowse link 10 94,231,585 94,254,046 RGD:6480464
G Dctn2 dynactin subunit 2 JBrowse link 7 70,555,953 70,571,433 RGD:6480464
G Ddx19b DEAD-box helicase 19B JBrowse link 19 43,217,199 43,246,196 RGD:6480464
G Ddx50 DExD-box helicase 50 JBrowse link 20 32,239,736 32,269,522 RGD:6480464
G Decr2 2,4-dienoyl-CoA reductase 2 JBrowse link 10 15,451,850 15,460,227 RGD:6480464
G Dhx8 DEAH-box helicase 8 JBrowse link 10 89,645,979 89,683,839 RGD:6480464
G Dnajb11 DnaJ heat shock protein family (Hsp40) member B11 JBrowse link 11 81,741,342 81,757,806 RGD:6480464
G Dpp3 dipeptidylpeptidase 3 JBrowse link 1 220,166,124 220,189,762 RGD:6480464
G Drd1 dopamine receptor D1 JBrowse link 17 11,099,736 11,104,352 RGD:6480464
G Drd2 dopamine receptor D2 JBrowse link 8 53,678,777 53,743,643 RGD:6480464
G Drd3 dopamine receptor D3 JBrowse link 11 61,819,102 61,883,223 RGD:6480464
G Dync1i2 dynein cytoplasmic 1 intermediate chain 2 JBrowse link 3 57,817,677 57,868,854 RGD:6480464
G Dync1li2 dynein, cytoplasmic 1 light intermediate chain 2 JBrowse link 19 740,007 762,897 RGD:6480464
G Eef1a1 eukaryotic translation elongation factor 1 alpha 1 JBrowse link 8 85,838,594 85,841,816 RGD:6480464
G Eef1a2 eukaryotic translation elongation factor 1 alpha 2 JBrowse link 3 176,657,104 176,666,282 RGD:6480464
G Eif1 eukaryotic translation initiation factor 1 JBrowse link 10 88,227,455 88,229,546 RGD:6480464
G Eif4a2 eukaryotic translation initiation factor 4A2 JBrowse link 11 81,373,047 81,379,680 RGD:6480464
G Exoc8 exocyst complex component 8 JBrowse link 19 57,647,305 57,649,794 RGD:6480464
G Faf2 Fas associated factor family member 2 JBrowse link 17 10,485,650 10,527,886 RGD:6480464
G Fah fumarylacetoacetate hydrolase JBrowse link 1 146,713,663 146,736,339 RGD:6480464
G Fam136a family with sequence similarity 136, member A JBrowse link 4 118,160,147 118,166,062 RGD:6480464
G Fkbp8 FKBP prolyl isomerase 8 JBrowse link 16 20,645,956 20,652,890 RGD:6480464
G Flywch2 FLYWCH family member 2 RGD:6480464
G Fmr1 FMRP translational regulator 1 JBrowse link X 154,684,924 154,722,369 RGD:6480464
G Galk1 galactokinase 1 JBrowse link 10 104,560,322 104,564,499 RGD:6480464
G Ganab glucosidase II alpha subunit JBrowse link 1 225,096,558 225,116,384 RGD:6480464
G Ggh gamma-glutamyl hydrolase JBrowse link 5 34,040,258 34,063,369 RGD:6480464
G Glrx glutaredoxin JBrowse link 2 2,606,032 2,615,944 RGD:6480464
G Gmppb GDP-mannose pyrophosphorylase B JBrowse link 8 116,826,251 116,856,159 RGD:6480464
G Gpx4 glutathione peroxidase 4 JBrowse link 7 12,516,357 12,519,154 RGD:6480464
G Gsn gelsolin JBrowse link 3 14,456,106 14,508,922 RGD:6480464
G Gtpbp4 GTP binding protein 4 JBrowse link 17 63,111,086 63,145,618 RGD:6480464
G Hibch 3-hydroxyisobutyryl-CoA hydrolase JBrowse link 9 53,446,185 53,526,727 RGD:6480464
G Hint2 histidine triad nucleotide binding protein 2 JBrowse link 5 59,150,344 59,152,599 RGD:6480464
G Hk1 hexokinase 1 JBrowse link 20 31,911,460 31,979,780 RGD:6480464
G Hmga1 high mobility group AT-hook 1 JBrowse link 20 7,132,501 7,140,155 RGD:6480464
G Hmox1 heme oxygenase 1 JBrowse link 19 14,508,634 14,515,455 RGD:6480464
G Hnrnpul2 heterogeneous nuclear ribonucleoprotein U-like 2 JBrowse link 1 225,015,722 225,027,640 RGD:6480464
G Igf2bp3 insulin-like growth factor 2 mRNA binding protein 3 JBrowse link 4 78,744,683 78,879,457 RGD:6480464
G Ipo9 importin 9 JBrowse link 13 52,203,384 52,256,196 RGD:6480464
G Iqgap3 IQ motif containing GTPase activating protein 3 JBrowse link 2 187,447,477 187,489,630 RGD:6480464
G Jpt2 Jupiter microtubule associated homolog 2 JBrowse link 10 14,304,108 14,324,170 RGD:6480464
G Letm1 leucine zipper and EF-hand containing transmembrane protein 1 JBrowse link 14 82,227,790 82,267,298 RGD:6480464
G Lta4h leukotriene A4 hydrolase JBrowse link 7 34,288,333 34,320,243 RGD:6480464
G Mak16 MAK16 homolog JBrowse link 16 64,729,254 64,737,807 RGD:6480464
G Man1b1 mannosidase, alpha, class 1B, member 1 JBrowse link 3 2,547,259 2,569,051 RGD:6480464
G Map1b microtubule-associated protein 1B JBrowse link 2 29,675,391 29,768,750 RGD:6480464
G Map2k2 mitogen activated protein kinase kinase 2 JBrowse link 7 11,458,971 11,478,520 RGD:6480464
G Metap2 methionyl aminopeptidase 2 JBrowse link 7 34,762,241 34,789,456 RGD:6480464
G Mtor mechanistic target of rapamycin kinase JBrowse link 5 165,263,813 165,373,967 RGD:6480464
G Ncaph non-SMC condensin I complex, subunit H JBrowse link 3 119,583,798 119,611,148 RGD:6480464
G Nceh1 neutral cholesterol ester hydrolase 1 JBrowse link 2 112,868,834 112,932,622 RGD:6480464
G Ndufb5 NADH:ubiquinone oxidoreductase subunit B5 JBrowse link 2 119,139,717 119,153,753 RGD:6480464
G Nelfe negative elongation factor complex member E JBrowse link 20 4,530,328 4,536,085 RGD:6480464
G Nfu1 NFU1 iron-sulfur cluster scaffold JBrowse link 4 118,814,284 118,834,955 RGD:6480464
G Nipsnap1 nipsnap homolog 1 JBrowse link 14 85,113,578 85,137,457 RGD:6480464
G Nubp2 nucleotide binding protein 2 JBrowse link 10 14,244,201 14,247,930 RGD:6480464
G Nufip2 nuclear FMR1 interacting protein 2 JBrowse link 10 65,168,145 65,200,210 RGD:6480464
G Nup155 nucleoporin 155 JBrowse link 2 57,206,665 57,258,242 RGD:6480464
G Palld palladin, cytoskeletal associated protein JBrowse link 16 31,865,712 31,948,168 RGD:6480464
G Pawr pro-apoptotic WT1 regulator JBrowse link 7 51,273,764 51,353,700 RGD:6480464
G Pds5a PDS5 cohesin associated factor A JBrowse link 14 44,185,445 44,282,308 RGD:6480464
G Picalm phosphatidylinositol binding clathrin assembly protein JBrowse link 1 154,377,229 154,458,966 RGD:6480464
G Pin1 peptidylprolyl cis/trans isomerase, NIMA-interacting 1 JBrowse link 8 21,669,236 21,680,615 RGD:6480464
G Ppil3 peptidylprolyl isomerase like 3 JBrowse link 9 65,315,407 65,329,145 RGD:6480464
G Ppp2cb protein phosphatase 2 catalytic subunit beta JBrowse link 16 62,273,276 62,294,767 RGD:6480464
G Praf2 PRA1 domain family, member 2 JBrowse link X 15,618,324 15,620,992 RGD:6480464
G Prkar1a protein kinase cAMP-dependent type I regulatory subunit alpha JBrowse link 10 97,940,705 97,959,199 RGD:6480464
G Prkca protein kinase C, alpha JBrowse link 10 96,186,509 96,585,168 RGD:6480464
G Prpf4 pre-mRNA processing factor 4 JBrowse link 5 78,267,248 78,281,172 RGD:6480464
G Prpsap1 phosphoribosyl pyrophosphate synthetase-associated protein 1 JBrowse link 10 105,430,516 105,492,154 RGD:6480464
G Pym1 PYM homolog 1, exon junction complex associated factor JBrowse link 7 3,172,798 3,193,994 RGD:6480464
G Rab3gap1 RAB3 GTPase activating protein catalytic subunit 1 JBrowse link 13 44,578,208 44,649,876 RGD:6480464
G Raf1 Raf-1 proto-oncogene, serine/threonine kinase JBrowse link 4 147,532,040 147,592,769 RGD:6480464
G Ranbp2 RAN binding protein 2 JBrowse link 20
20
28,027,054
28,365,538
28,076,664
28,375,676
RGD:6480464
G Rbm39 RNA binding motif protein 39 JBrowse link 3 151,691,498 151,724,723 RGD:6480464
G Reep5 receptor accessory protein 5 JBrowse link 18 27,128,462 27,159,693 RGD:6480464
G Rfc4 replication factor C subunit 4 JBrowse link 11 81,358,592 81,373,044 RGD:6480464
G Rhob ras homolog family member B JBrowse link 6 33,689,127 33,691,301 RGD:6480464
G Rmnd5a required for meiotic nuclear division 5 homolog A JBrowse link 4 99,249,159 99,305,805 RGD:6480464
G Rnf40 ring finger protein 40 JBrowse link 1 199,037,472 199,052,823 RGD:6480464
G Rock2 Rho-associated coiled-coil containing protein kinase 2 JBrowse link 6 42,180,864 42,289,910 RGD:6480464
G Rpa2 replication protein A2 JBrowse link 5 150,957,041 150,967,597 RGD:6480464
G Rps28 ribosomal protein S28 JBrowse link 7 18,682,071 18,683,440 RGD:6480464
G Rps6ka3 ribosomal protein S6 kinase A3 JBrowse link X 37,469,736 37,576,055 RGD:6480464
G Septin11 septin 11 JBrowse link 14 16,369,544 16,405,645 RGD:6480464
G Slc22a1 solute carrier family 22 member 1 JBrowse link 1 48,273,639 48,300,645 RGD:6480464
G Slc25a10 solute carrier family 25 member 10 JBrowse link 10 109,665,682 109,674,782 RGD:6480464
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 JBrowse link 19 30,936,703 30,969,454 RGD:6480464
G Sms spermine synthase JBrowse link X 40,363,646 40,415,110 RGD:6480464
G Sncg synuclein, gamma JBrowse link 16 10,722,110 10,726,648 RGD:6480464
G Snrpe small nuclear ribonucleoprotein polypeptide E JBrowse link 13 50,252,707 50,258,951 RGD:6480464
G Snw1 SNW domain containing 1 JBrowse link 6 111,483,698 111,507,782 RGD:6480464
G Snx1 sorting nexin 1 JBrowse link 8 71,745,687 71,786,182 RGD:6480464
G Snx2 sorting nexin 2 JBrowse link 18 48,132,386 48,173,974 RGD:6480464
G Spdl1 spindle apparatus coiled-coil protein 1 JBrowse link 10 19,628,070 19,652,914 RGD:6480464
G Sri sorcin JBrowse link 4 23,004,657 23,029,233 RGD:6480464
G Srp19 signal recognition particle 19 JBrowse link 18 27,114,822 27,121,062 RGD:6480464
G Srp68 signal recognition particle 68 JBrowse link 10 105,123,324 105,150,080 RGD:6480464
G Srpra SRP receptor subunit alpha JBrowse link 8 36,410,683 36,416,766 RGD:6480464
G Stat1 signal transducer and activator of transcription 1 JBrowse link 9 54,287,540 54,327,958 RGD:6480464
G Stxbp1 syntaxin binding protein 1 JBrowse link 3 11,823,779 11,885,479 RGD:6480464
G Swap70 switching B-cell complex subunit SWAP70 JBrowse link 1 174,862,683 174,924,101 RGD:6480464
G Syvn1 synoviolin 1 JBrowse link 1 221,409,281 221,416,229 RGD:6480464
G Tma7 translation machinery associated 7 homolog JBrowse link 8 117,815,725 117,820,422 RGD:6480464
G Tmed4 transmembrane p24 trafficking protein 4 JBrowse link 14 86,390,327 86,395,151 RGD:6480464
G Top1 DNA topoisomerase I JBrowse link 3 156,635,688 156,717,686 RGD:6480464
G Tsnax translin-associated factor X JBrowse link 19 57,771,539 57,785,567 RGD:6480464
G Tsr2 TSR2, ribosome maturation factor JBrowse link X 20,141,406 20,146,082 RGD:6480464
G Ttc37 tetratricopeptide repeat domain 37 JBrowse link 2 2,891,265 3,037,602 RGD:6480464
G Uap1 UDP-N-acetylglucosamine pyrophosphorylase 1 JBrowse link 13 88,463,532 88,497,901 RGD:6480464
G Vps45 vacuolar protein sorting 45 homolog JBrowse link 2 198,123,747 198,184,739 RGD:6480464
G Wdhd1 WD repeat and HMG-box DNA binding protein 1 JBrowse link 15 24,021,674 24,056,073 RGD:6480464

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19669
    role 19613
      biological role 19611
        biochemical role 19138
          metabolite 19106
            eukaryotic metabolite 18748
              plant metabolite 17044
                palmatine 159
                  tetrahydropalmatine 147
Path 2
Term Annotations click to browse term
  CHEBI ontology 19669
    subatomic particle 19665
      composite particle 19665
        hadron 19665
          baryon 19665
            nucleon 19665
              atomic nucleus 19665
                atom 19665
                  main group element atom 19545
                    p-block element atom 19545
                      carbon group element atom 19428
                        carbon atom 19420
                          organic molecular entity 19420
                            organic molecule 19343
                              organic cyclic compound 19093
                                organic heterocyclic compound 18157
                                  organonitrogen heterocyclic compound 16961
                                    dibenzoquinolizine 351
                                      berberine alkaloid 351
                                        palmatine 159
                                          tetrahydropalmatine 147
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.