Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References FTP Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) RatMine GViewer (Genome Viewer) Overgo Probe Designer ACP Haplotyper Genome Scanner
Aging & Age-Related Disease Cancer Cardiovascular Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Genetic Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS
Term:prenyl diphosphate
go back to main search page
Accession:CHEBI:16057 term browser browse the term
Definition:A prenol phosphate that is a phosphoantigen comprising the O-pyrophosphate of prenol.
Synonyms:exact_synonym: 3-methylbut-2-en-1-yl trihydrogen diphosphate
 related_synonym: 2-Isopentenyl diphosphate;   3,3-dimethylallyl pyrophosphate;   3-methylbut-2-enyl phosphono hydrogen phosphate;   DMAPP;   Dimethylallyl diphosphate;   Dimethylallyl pyrophosphate;   Formula=C5H12O7P2;   InChI=1S/C5H12O7P2/c1-5(2)3-4-11-14(9,10)12-13(6,7)8/h3H,4H2,1-2H3,(H,9,10)(H2,6,7,8);   InChIKey=CBIDRCWHNCKSTO-UHFFFAOYSA-N;   Monoprenyl diphosphate;   Prenol pyrophosphate;   SMILES=CC(C)=CCOP(O)(=O)OP(O)(O)=O;   delta-Prenyl diphosphate;   delta2-Isopentenyl diphosphate
 alt_id: CHEBI:12280;   CHEBI:14169;   CHEBI:14883;   CHEBI:23803;   CHEBI:26245;   CHEBI:341937;   CHEBI:42074;   CHEBI:4616;   CHEBI:8394
 xref: Beilstein:1713791 "Beilstein";   CAS:358-72-5 "ChemIDplus";   CAS:358-72-5 "KEGG COMPOUND";   DrugBank:DB01785;   KEGG:C00235;   KEGG:C17627;   KNApSAcK:C00007294;   LIPID_MAPS_instance:LMPR01010001 "LIPID MAPS"
 xref_mesh: MESH:C043060
 xref: PDBeChem:DMA;   PMID:10608778 "Europe PMC";   PMID:11355861 "Europe PMC";   PMID:22300296 "Europe PMC";   PMID:23262281 "Europe PMC";   PMID:27356974 "Europe PMC";   Reaxys:1713791 "Reaxys"
 cyclic_relationship: is_conjugate_acid_of CHEBI:57623

show annotations for term's descendants       view all columns           Sort by:
 
prenyl diphosphate term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Il12rb1 interleukin 12 receptor subunit beta 1 JBrowse link 16 20,370,722 20,383,576 RGD:6480464
G Mvk mevalonate kinase JBrowse link 12 47,904,266 47,920,457 RGD:6480464
G Tnfrsf1b TNF receptor superfamily member 1B JBrowse link 5 163,136,390 163,167,299 RGD:6480464
Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19679
    role 19623
      biological role 19621
        epitope 6767
          prenyl diphosphate 3
Path 2
Term Annotations click to browse term
  CHEBI ontology 19679
    subatomic particle 19675
      composite particle 19675
        hadron 19675
          baryon 19675
            nucleon 19675
              atomic nucleus 19675
                atom 19675
                  main group element atom 19555
                    p-block element atom 19555
                      chalcogen 19242
                        oxygen atom 19196
                          oxygen molecular entity 19196
                            hydroxides 18973
                              oxoacid 18084
                                pnictogen oxoacid 8540
                                  phosphorus oxoacid 8434
                                    phosphoric acids 7318
                                      phosphoric acid 7318
                                        phosphoric acid derivative 6968
                                          phosphate 6968
                                            organic phosphate 6967
                                              phospholipid 286
                                                isoprenoid phosphate 72
                                                  prenol phosphate 72
                                                    prenyl diphosphate 3
paths to the root

Contact Us |  About Us |  License CC BY 4.0 |  Legal Disclaimer |  © Medical College of Wisconsin
NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.