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CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.
Term:prenyl diphosphate
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Accession:CHEBI:16057 term browser browse the term
Definition:A prenol phosphate that is a phosphoantigen comprising the O-pyrophosphate of prenol.
Synonyms:exact_synonym: 3-methylbut-2-en-1-yl trihydrogen diphosphate
 related_synonym: 2-Isopentenyl diphosphate;   3,3-dimethylallyl pyrophosphate;   3-methylbut-2-enyl phosphono hydrogen phosphate;   DIMETHYLALLYL DIPHOSPHATE;   DMAPP;   Dimethylallyl pyrophosphate;   Formula=C5H12O7P2;   InChI=1S/C5H12O7P2/c1-5(2)3-4-11-14(9,10)12-13(6,7)8/h3H,4H2,1-2H3,(H,9,10)(H2,6,7,8);   InChIKey=CBIDRCWHNCKSTO-UHFFFAOYSA-N;   Monoprenyl diphosphate;   Prenol pyrophosphate;   SMILES=CC(C)=CCOP(O)(=O)OP(O)(O)=O;   delta-Prenyl diphosphate;   delta2-Isopentenyl diphosphate
 alt_id: CHEBI:12280;   CHEBI:14169;   CHEBI:14883;   CHEBI:23803;   CHEBI:26245;   CHEBI:341937;   CHEBI:42074;   CHEBI:4616;   CHEBI:8394
 xref: Beilstein:1713791;   CAS:358-72-5;   DrugBank:DB01785;   KEGG:C00235;   KEGG:C17627;   KNApSAcK:C00007294;   LIPID_MAPS_instance:LMPR01010001
 xref_mesh: MESH:C043060
 xref: PDBeChem:DMA;   PMID:10608778;   PMID:11355861;   PMID:22300296;   PMID:23262281;   PMID:27356974;   Reaxys:1713791
 cyclic_relationship: is_conjugate_acid_of CHEBI:57623


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prenyl diphosphate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Il12rb1 interleukin 12 receptor subunit beta 1 increases expression ISO 3,3-dimethylallyl pyrophosphate results in increased expression of IL12RB1 protein CTD PMID:12932289 NCBI chr16:18,620,228...18,633,207
Ensembl chr16:18,620,770...18,632,769 		JBrowse link
G Mvk mevalonate kinase decreases activity
multiple interactions		 ISO 3,3-dimethylallyl pyrophosphate results in decreased activity of MVK protein
3,3-dimethylallyl pyrophosphate inhibits the reaction [MVK protein results in increased hydrolysis of Adenosine Triphosphate]; 3,3-dimethylallyl pyrophosphate inhibits the reaction [MVK protein results in increased phosphorylation of Mevalonic Acid]		 CTD PMID:9392419 NCBI chr12:42,141,391...42,158,893
Ensembl chr12:42,141,384...42,158,882 		JBrowse link
G Tnfrsf1b TNF receptor superfamily member 1B increases expression ISO 3,3-dimethylallyl pyrophosphate results in increased expression of TNFRSF1B protein CTD PMID:12932289 NCBI chr 5:157,070,642...157,104,216
Ensembl chr 5:157,070,642...157,104,206 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19811
    role 19818
      biological role 19785
        epitope 7028
          prenyl diphosphate 3
Path 2
Term Annotations click to browse term
  CHEBI ontology 19811
    subatomic particle 19809
      composite particle 19809
        hadron 19840
          baryon 19809
            nucleon 19809
              atomic nucleus 19809
                atom 19809
                  main group element atom 19759
                    p-block element atom 19759
                      chalcogen 19515
                        oxygen atom 19520
                          oxygen molecular entity 19490
                            hydroxides 19300
                              oxoacid 18725
                                pnictogen oxoacid 13221
                                  phosphorus oxoacid 12413
                                    phosphoric acids 11427
                                      phosphoric acid 11417
                                        phosphoric acid derivative 11226
                                          phosphate 11225
                                            organic phosphate 11225
                                              phospholipid 316
                                                isoprenoid phosphate 75
                                                  prenol phosphate 75
                                                    prenyl diphosphate 3
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