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ONTOLOGY REPORT - ANNOTATIONS


Term:lycopene
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Accession:CHEBI:15948 term browser browse the term
Definition:An acyclic carotene commonly obtained from tomatoes and other red fruits.
Synonyms:exact_synonym: psi,psi-carotene
 related_synonym: (6E,8E,10E,12E,14E,16E,18E,20E,22E,24E,26E)-2,6,10,14,19,23,27,31-octamethyldotriaconta-2,6,8,10,12,14,16,18,20,22,24,26,30-tridecaene;   Formula=C40H56;   InChI=1S/C40H56/c1-33(2)19-13-23-37(7)27-17-31-39(9)29-15-25-35(5)21-11-12-22-36(6)26-16-30-40(10)32-18-28-38(8)24-14-20-34(3)4/h11-12,15-22,25-32H,13-14,23-24H2,1-10H3/b12-11+,25-15+,26-16+,31-17+,32-18+,35-21+,36-22+,37-27+,38-28+,39-29+,40-30+;   InChIKey=OAIJSZIZWZSQBC-GYZMGTAESA-N;   SMILES=CC(C)=CCC\\C(C)=C\\C=C\\C(C)=C\\C=C\\C(C)=C\\C=C\\C=C(C)\\C=C\\C=C(C)\\C=C\\C=C(/C)CCC=C(C)C;   all-trans-lycopene
 alt_id: CHEBI:14541;   CHEBI:26367;   CHEBI:43789;   CHEBI:6596
 xref: Beilstein:1730097 "Beilstein";   CAS:502-65-8 "ChemIDplus";   CAS:502-65-8 "KEGG COMPOUND";   COMe:MOL000048;   Drug_Central:4617 "DrugCentral";   HMDB:HMDB0003000;   KEGG:C05432;   KNApSAcK:C00000911;   LIPID_MAPS_instance:LMPR01070257 "LIPID MAPS"
 xref_mesh: MESH:C015329
 xref: MetaCyc:CPD1F-114;   PDBeChem:LYC;   PMID:11117277 "Europe PMC";   PMID:15341191 "Europe PMC";   PMID:24397737 "Europe PMC";   Reaxys:1730097 "Reaxys";   Wikipedia:Lycopene


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lycopene term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ache acetylcholinesterase JBrowse link 5 137,288,247 137,294,466 RGD:6480464
G Add1 adducin 1 (alpha) JBrowse link 5 34,573,664 34,632,308 RGD:6480464
G Ager advanced glycosylation end product-specific receptor JBrowse link 17 34,597,460 34,600,937 RGD:6480464
G Ahr aryl-hydrocarbon receptor JBrowse link 12 35,497,979 35,534,989 RGD:6480464
G Aif1 allograft inflammatory factor 1 JBrowse link 17 35,170,986 35,176,083 RGD:6480464
G Akt1 thymoma viral proto-oncogene 1 JBrowse link 12 112,653,821 112,674,884 RGD:6480464
G Alad aminolevulinate, delta-, dehydratase JBrowse link 4 62,505,984 62,520,063 RGD:6480464
G Ar androgen receptor JBrowse link X 98,148,757 98,323,218 RGD:6480464
G Atp1a1 ATPase, Na+/K+ transporting, alpha 1 polypeptide JBrowse link 3 101,576,219 101,604,707 RGD:6480464
G Atp1a2 ATPase, Na+/K+ transporting, alpha 2 polypeptide JBrowse link 1 172,271,709 172,298,064 RGD:6480464
G Atp1a3 ATPase, Na+/K+ transporting, alpha 3 polypeptide JBrowse link 7 24,978,165 25,006,077 RGD:6480464
G Atp1a4 ATPase, Na+/K+ transporting, alpha 4 polypeptide JBrowse link 1 172,223,508 172,258,424 RGD:6480464
G Atp1b1 ATPase, Na+/K+ transporting, beta 1 polypeptide JBrowse link 1 164,437,099 164,458,355 RGD:6480464
G Atp1b2 ATPase, Na+/K+ transporting, beta 2 polypeptide JBrowse link 11 69,599,728 69,605,978 RGD:6480464
G Atp1b3 ATPase, Na+/K+ transporting, beta 3 polypeptide JBrowse link 9 96,332,655 96,364,431 RGD:6480464
G Atp1b4 ATPase, (Na+)/K+ transporting, beta 4 polypeptide JBrowse link X 38,316,122 38,336,784 RGD:6480464
G Atp2a1 ATPase, Ca++ transporting, cardiac muscle, fast twitch 1 JBrowse link 7 126,445,858 126,463,103 RGD:6480464
G Atp2a2 ATPase, Ca++ transporting, cardiac muscle, slow twitch 2 JBrowse link 5 122,453,513 122,502,225 RGD:6480464
G Atp2a3 ATPase, Ca++ transporting, ubiquitous JBrowse link 11 72,961,169 72,993,043 RGD:6480464
G Atp2b1 ATPase, Ca++ transporting, plasma membrane 1 JBrowse link 10 98,914,630 99,026,143 RGD:6480464
G Atp2b2 ATPase, Ca++ transporting, plasma membrane 2 JBrowse link 6 113,743,831 114,042,613 RGD:6480464
G Atp2b3 ATPase, Ca++ transporting, plasma membrane 3 JBrowse link X 73,502,749 73,573,275 RGD:6480464
G Atp2b4 ATPase, Ca++ transporting, plasma membrane 4 JBrowse link 1 133,702,674 133,801,059 RGD:6480464
G Atp2c1 ATPase, Ca++-sequestering JBrowse link 9 105,411,362 105,521,257 RGD:6480464
G Atp2c2 ATPase, Ca++ transporting, type 2C, member 2 JBrowse link 8 119,700,009 119,757,718 RGD:6480464
G Bach1 BTB and CNC homology 1, basic leucine zipper transcription factor 1 JBrowse link 16 87,698,954 87,733,346 RGD:6480464
G Bap1 Brca1 associated protein 1 JBrowse link 14 31,251,352 31,259,930 RGD:6480464
G Bax BCL2-associated X protein JBrowse link 7 45,461,695 45,466,903 RGD:6480464
G Bcl2 B cell leukemia/lymphoma 2 JBrowse link 1 106,538,176 106,714,290 RGD:6480464
G Bco1 beta-carotene oxygenase 1 JBrowse link 8 117,095,851 117,133,720 RGD:6480464
G Bdnf brain derived neurotrophic factor JBrowse link 2 109,674,700 109,727,043 RGD:6480464
G Braf Braf transforming gene JBrowse link 6 39,603,231 39,725,658 RGD:6480464
G C1qa complement component 1, q subcomponent, alpha polypeptide JBrowse link 4 136,895,916 136,898,844 RGD:6480464
G C4b complement component 4B (Chido blood group) JBrowse link 17 34,728,139 34,743,902 RGD:6480464
G Casp3 caspase 3 JBrowse link 8 46,617,291 46,639,698 RGD:6480464
G Casp8 caspase 8 JBrowse link 1 58,795,233 58,847,503 RGD:6480464
G Casp9 caspase 9 JBrowse link 4 141,793,612 141,815,978 RGD:6480464
G Cat catalase JBrowse link 2 103,453,904 103,485,153 RGD:6480464
G Ccnd1 cyclin D1 JBrowse link 7 144,929,931 144,939,937 RGD:6480464
G Ccne1 cyclin E1 JBrowse link 7 38,097,984 38,107,490 RGD:6480464
G Cdk1 cyclin-dependent kinase 1 JBrowse link 10 69,335,146 69,352,912 RGD:6480464
G Cdk4 cyclin-dependent kinase 4 JBrowse link 10 127,063,535 127,067,288 RGD:6480464
G Cdk5 cyclin-dependent kinase 5 JBrowse link 5 24,407,597 24,423,587 RGD:6480464
G Cdk7 cyclin-dependent kinase 7 JBrowse link 13 100,697,024 100,730,942 RGD:6480464
G Cdk9 cyclin-dependent kinase 9 (CDC2-related kinase) JBrowse link 2 32,705,782 32,712,784 RGD:6480464
G Cdkn1a cyclin-dependent kinase inhibitor 1A (P21) JBrowse link 17 29,090,979 29,100,722 RGD:6480464
G Chga chromogranin A JBrowse link 12 102,554,941 102,565,027 RGD:6480464
G Chgb chromogranin B JBrowse link 2 132,781,642 132,795,079 RGD:6480464
G Crb1 crumbs family member 1, photoreceptor morphogenesis associated JBrowse link 1 139,176,649 139,379,316 RGD:6480464
G Csprs component of Sp100-rs RGD:6480464
G Ctss cathepsin S JBrowse link 3 95,526,786 95,556,405 RGD:6480464
G Cxcl14 chemokine (C-X-C motif) ligand 14 JBrowse link 13 56,288,643 56,296,811 RGD:6480464
G Cxcl15 chemokine (C-X-C motif) ligand 15 JBrowse link 5 90,794,534 90,803,067 RGD:6480464
G Cyb5a cytochrome b5 type A (microsomal) JBrowse link 18 84,851,338 84,879,871 RGD:6480464
G Cyp11a1 cytochrome P450, family 11, subfamily a, polypeptide 1 JBrowse link 9 57,998,024 58,027,031 RGD:6480464
G Cyp1a1 cytochrome P450, family 1, subfamily a, polypeptide 1 JBrowse link 9 57,687,928 57,703,824 RGD:6480464
G Cyp1a2 cytochrome P450, family 1, subfamily a, polypeptide 2 JBrowse link 9 57,676,937 57,683,655 RGD:6480464
G Cyp1b1 cytochrome P450, family 1, subfamily b, polypeptide 1 JBrowse link 17 79,706,940 79,715,061 RGD:6480464
G Cyp21a1 cytochrome P450, family 21, subfamily a, polypeptide 1 JBrowse link 17 34,801,348 34,804,426 RGD:6480464
G Cyp2a4 cytochrome P450, family 2, subfamily a, polypeptide 4 JBrowse link 7 26,307,192 26,315,088 RGD:6480464
G Cyp2b9 cytochrome P450, family 2, subfamily b, polypeptide 9 JBrowse link 7 26,173,350 26,210,661 RGD:6480464
G Cyp2e1 cytochrome P450, family 2, subfamily e, polypeptide 1 JBrowse link 7 140,763,819 140,774,990 RGD:6480464
G Cyp2j5 cytochrome P450, family 2, subfamily j, polypeptide 5 JBrowse link 4 96,627,432 96,664,171 RGD:6480464
G Cyp3a11 cytochrome P450, family 3, subfamily a, polypeptide 11 JBrowse link 5 145,854,607 145,879,854 RGD:6480464
G Cyp3a57 cytochrome P450, family 3, subfamily a, polypeptide 57 JBrowse link 5 145,345,149 145,390,926 RGD:6480464
G Cyp7b1 cytochrome P450, family 7, subfamily b, polypeptide 1 JBrowse link 3 18,071,944 18,243,890 RGD:6480464
G Ddb2 damage specific DNA binding protein 2 JBrowse link 2 91,211,545 91,237,132 RGD:6480464
G Eif4g1 eukaryotic translation initiation factor 4, gamma 1 JBrowse link 16 20,672,720 20,692,883 RGD:6480464
G Esr1 estrogen receptor 1 (alpha) JBrowse link 10 4,611,989 5,005,633 RGD:6480464
G Esr2 estrogen receptor 2 (beta) JBrowse link 12 76,120,419 76,177,259 RGD:6480464
G Fancc Fanconi anemia, complementation group C JBrowse link 13 63,301,334 63,497,292 RGD:6480464
G Fancf Fanconi anemia, complementation group F JBrowse link 7 51,860,577 51,862,267 RGD:6480464
G Fasl Fas ligand (TNF superfamily, member 6) JBrowse link 1 161,780,691 161,788,495 RGD:6480464
G Fos FBJ osteosarcoma oncogene JBrowse link 12 85,473,890 85,477,274 RGD:6480464
G Get1 guided entry of tail-anchored proteins factor 1 JBrowse link 16 96,145,400 96,157,852 RGD:6480464
G Gfap glial fibrillary acidic protein JBrowse link 11 102,887,336 102,897,200 RGD:6480464
G Gja1 gap junction protein, alpha 1 JBrowse link 10 56,377,300 56,390,419 RGD:6480464
G Gja4 gap junction protein, alpha 4 JBrowse link 4 127,311,420 127,314,039 RGD:6480464
G Gja5 gap junction protein, alpha 5 JBrowse link 3 97,032,402 97,053,634 RGD:6480464
G Gpx4 glutathione peroxidase 4 JBrowse link 10 80,047,166 80,056,439 RGD:6480464
G Gsr glutathione reductase JBrowse link 8 33,653,238 33,698,162 RGD:6480464
G Hmgb1 high mobility group box 1 JBrowse link 5 149,046,702 149,053,057 RGD:6480464
G Hmox1 heme oxygenase 1 JBrowse link 8 75,093,618 75,100,593 RGD:6480464
G Hsd3b1 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1 JBrowse link 3 98,842,356 98,859,794 RGD:6480464
G Hspa4 heat shock protein 4 JBrowse link 11 53,259,814 53,300,479 RGD:6480464
G Icam1 intercellular adhesion molecule 1 JBrowse link 9 21,015,940 21,028,814 RGD:6480464
G Igf1 insulin-like growth factor 1 JBrowse link 10 87,858,265 87,937,047 RGD:6480464
G Igf1r insulin-like growth factor I receptor JBrowse link 7 67,952,257 68,233,668 RGD:6480464
G Igfbp2 insulin-like growth factor binding protein 2 JBrowse link 1 72,824,480 72,852,474 RGD:6480464
G Il10 interleukin 10 JBrowse link 1 131,019,845 131,024,970 RGD:6480464
G Il1b interleukin 1 beta JBrowse link 2 129,364,569 129,371,164 RGD:6480464
G Il2 interleukin 2 JBrowse link 3 37,120,713 37,125,954 RGD:6480464
G Il6 interleukin 6 JBrowse link 5 30,013,114 30,019,975 RGD:6480464
G Ivl involucrin JBrowse link 3 92,570,899 92,573,790 RGD:6480464
G Jak1 Janus kinase 1 JBrowse link 4 101,151,974 101,265,282 RGD:6480464
G Jun jun proto-oncogene JBrowse link 4 95,049,036 95,052,222 RGD:6480464
G Kif2a kinesin family member 2A JBrowse link 13 106,960,585 107,022,476 RGD:6480464
G Kpna2 karyopherin (importin) alpha 2 JBrowse link 11 106,988,629 106,999,525 RGD:6480464
G Ldlr low density lipoprotein receptor JBrowse link 9 21,723,576 21,749,919 RGD:6480464
G Lipa lysosomal acid lipase A JBrowse link 19 34,492,316 34,527,474 RGD:6480464
G Lpo lactoperoxidase JBrowse link 11 87,806,428 87,826,114 RGD:6480464
G Lyz1 lysozyme 1 JBrowse link 10 117,287,795 117,292,868 RGD:6480464
G Map2k1 mitogen-activated protein kinase kinase 1 JBrowse link 9 64,185,769 64,253,605 RGD:6480464
G Map2k2 mitogen-activated protein kinase kinase 2 JBrowse link 10 81,105,913 81,124,697 RGD:6480464
G Map2k4 mitogen-activated protein kinase kinase 4 JBrowse link 11 65,688,244 65,788,359 RGD:6480464
G Map2k6 mitogen-activated protein kinase kinase 6 JBrowse link 11 110,399,102 110,525,522 RGD:6480464
G Mapk1 mitogen-activated protein kinase 1 JBrowse link 16 16,983,382 17,047,453 RGD:6480464
G Mapk14 mitogen-activated protein kinase 14 JBrowse link 17 28,691,342 28,748,405 RGD:6480464
G Mapk3 mitogen-activated protein kinase 3 JBrowse link 7 126,759,626 126,765,816 RGD:6480464
G Mapk8 mitogen-activated protein kinase 8 JBrowse link 14 33,377,898 33,447,353 RGD:6480464
G Mgat2 mannoside acetylglucosaminyltransferase 2 JBrowse link 12 69,184,158 69,186,773 RGD:6480464
G Mlh1 mutL homolog 1 JBrowse link 9 111,228,228 111,271,786 RGD:6480464
G Mmp2 matrix metallopeptidase 2 JBrowse link 8 92,827,290 92,853,421 RGD:6480464
G Msh2 mutS homolog 2 JBrowse link 17 87,672,532 87,723,713 RGD:6480464
G Msh6 mutS homolog 6 JBrowse link 17 87,975,050 87,990,892 RGD:6480464
G Nfe2l2 nuclear factor, erythroid derived 2, like 2 JBrowse link 2 75,675,513 75,704,663 RGD:6480464
G Nfkb1 nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105 JBrowse link 3 135,584,655 135,691,969 RGD:6480464
G Nfkbia nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha JBrowse link 12 55,489,409 55,492,647 RGD:6480464
G Nos1 nitric oxide synthase 1, neuronal JBrowse link 5 117,866,839 117,958,840 RGD:6480464
G Nqo1 NAD(P)H dehydrogenase, quinone 1 JBrowse link 8 107,388,225 107,403,205 RGD:6480464
G Nup214 nucleoporin 214 JBrowse link 2 31,974,408 32,053,975 RGD:6480464
G Pah phenylalanine hydroxylase JBrowse link 10 87,521,795 87,584,137 RGD:6480464
G Parp1 poly (ADP-ribose) polymerase family, member 1 JBrowse link 1 180,568,891 180,600,999 RGD:6480464
G Pcna proliferating cell nuclear antigen JBrowse link 2 132,249,286 132,253,180 RGD:6480464
G Pla2g2a phospholipase A2, group IIA (platelets, synovial fluid) JBrowse link 4 138,831,857 138,835,189 RGD:6480464
G Pomc pro-opiomelanocortin-alpha JBrowse link 12 3,954,945 3,960,643 RGD:6480464
G Prkdc protein kinase, DNA activated, catalytic polypeptide JBrowse link 16 15,637,444 15,842,239 RGD:6480464
G Ptgs2 prostaglandin-endoperoxide synthase 2 JBrowse link 1 150,100,031 150,108,234 RGD:6480464
G Rad50 RAD50 double strand break repair protein JBrowse link 11 53,649,519 53,707,319 RGD:6480464
G Rassf7 Ras association (RalGDS/AF-6) domain family (N-terminal) member 7 JBrowse link 7 141,215,425 141,218,658 RGD:6480464
G Rb1 RB transcriptional corepressor 1 JBrowse link 14 73,192,858 73,325,951 RGD:6480464
G Rdx radixin JBrowse link 9 52,047,150 52,088,738 RGD:6480464
G Rps6ka1 ribosomal protein S6 kinase polypeptide 1 JBrowse link 4 133,847,290 133,887,797 RGD:6480464
G Rps6ka3 ribosomal protein S6 kinase polypeptide 3 JBrowse link X 159,255,665 159,368,244 RGD:6480464
G Rrm2 ribonucleotide reductase M2 JBrowse link 12 24,708,254 24,714,146 RGD:6480464
G Sbp spermine binding protein JBrowse link 17 23,941,994 23,945,607 RGD:6480464
G Sele selectin, endothelial cell JBrowse link 1 164,039,614 164,058,487 RGD:6480464
G Selenop selenoprotein P JBrowse link 15 3,270,767 3,280,510 RGD:6480464
G Sirt1 sirtuin 1 JBrowse link 10 63,319,005 63,339,035 RGD:6480464
G Skap2 src family associated phosphoprotein 2 JBrowse link 6 51,859,165 52,012,549 RGD:6480464
G Smad3 SMAD family member 3 JBrowse link 9 63,646,766 63,757,994 RGD:6480464
G Smc1a structural maintenance of chromosomes 1A JBrowse link X 152,016,428 152,061,973 RGD:6480464
G Srd5a1 steroid 5 alpha-reductase 1 JBrowse link 13 69,573,449 69,611,485 RGD:6480464
G Star steroidogenic acute regulatory protein JBrowse link 8 25,808,474 25,815,982 RGD:6480464
G Stat3 signal transducer and activator of transcription 3 JBrowse link 11 100,886,806 100,939,594 RGD:6480464
G Tff1 trefoil factor 1 JBrowse link 17 31,161,395 31,165,060 RGD:6480464
G Tfpi2 tissue factor pathway inhibitor 2 JBrowse link 6 3,962,589 3,988,978 RGD:6480464
G Tgfa transforming growth factor alpha JBrowse link 6 86,195,038 86,275,743 RGD:6480464
G Tlr2 toll-like receptor 2 JBrowse link 3 83,836,272 83,841,824 RGD:6480464
G Tlr4 toll-like receptor 4 JBrowse link 4 66,827,551 66,846,581 RGD:6480464
G Tnf tumor necrosis factor JBrowse link 17 35,199,367 35,202,007 RGD:6480464
G Trp53 transformation related protein 53 JBrowse link 11 69,580,348 69,591,873 RGD:6480464
G Vcam1 vascular cell adhesion molecule 1 JBrowse link 3 116,110,020 116,129,688 RGD:6480464
G Vcp valosin containing protein JBrowse link 4 42,979,964 43,000,507 RGD:6480464

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 21021
    role 21002
      chemical role 20344
        antioxidant 14266
          lycopene 154
            lycophyll 0
            lycoxanthin 0
Path 2
Term Annotations click to browse term
  CHEBI ontology 21021
    subatomic particle 21015
      composite particle 21015
        hadron 21015
          baryon 21015
            nucleon 21015
              atomic nucleus 21015
                atom 21015
                  main group element atom 20858
                    main group molecular entity 20858
                      s-block molecular entity 20348
                        hydrogen molecular entity 20256
                          hydrides 19087
                            organic hydride 18328
                              organic fundamental parent 18328
                                hydrocarbon 17843
                                  terpene 9544
                                    tetraterpene 409
                                      carotene 409
                                        carotenoid 409
                                          carotenoid psi-end group 154
                                            lycopene 154
                                              lycophyll 0
                                              lycoxanthin 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.