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ONTOLOGY REPORT - ANNOTATIONS


Term:columbamine
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Accession:CHEBI:15920 term browser browse the term
Definition:A berberine alkaloid that has formula C20H20NO4.
Synonyms:exact_synonym: 2-hydroxy-3,9,10-trimethoxy-5,6-dihydroisoquino[3,2-a]isoquinolinium
 related_synonym: 5,6-dihydro-2-hydroxy-3,9,10-trimethoxydibenzo[a,g]quinolizinium;   Formula=C20H20NO4;   InChI=1S/C20H19NO4/c1-23-18-5-4-12-8-16-14-10-17(22)19(24-2)9-13(14)6-7-21(16)11-15(12)20(18)25-3/h4-5,8-11H,6-7H2,1-3H3/p+1;   InChIKey=YYFOFDHQVIODOQ-UHFFFAOYSA-O;   SMILES=COc1cc2CC[n+]3cc4c(OC)c(OC)ccc4cc3-c2cc1O
 alt_id: CHEBI:14014;   CHEBI:23363;   CHEBI:3827
 xref: CAS:3621-36-1 "KEGG COMPOUND";   KEGG:C01795;   KNApSAcK:C00024667
 xref_mesh: MESH:C055786


show annotations for term's descendants       view all columns           Sort by:
 
columbamine term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdh5 cadherin 5 JBrowse link 19 1,025,122 1,074,333 RGD:6480464
G Cdk6 cyclin-dependent kinase 6 JBrowse link 4 27,781,728 27,969,653 RGD:6480464
G Csf2 colony stimulating factor 2 JBrowse link 10 39,602,089 39,604,070 RGD:6480464
G Ephb2 Eph receptor B2 JBrowse link 5 155,024,478 155,143,539 RGD:6480464
G Maged1 MAGE family member D1 JBrowse link X 63,803,194 63,809,715 RGD:6480464
G Mmp2 matrix metallopeptidase 2 JBrowse link 19 15,542,771 15,570,589 RGD:6480464
G Sox17 SRY-box transcription factor 17 JBrowse link 5 14,890,318 14,895,907 RGD:6480464
G Stat3 signal transducer and activator of transcription 3 JBrowse link 10 88,790,401 88,842,263 RGD:6480464

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19728
    role 19675
      biological role 19673
        biochemical role 19178
          metabolite 19150
            alkaloid 5274
              isoquinoline alkaloid 1122
                berberine alkaloid 354
                  columbamine 8
                    (S)-tetrahydrocolumbamine 0
Path 2
Term Annotations click to browse term
  CHEBI ontology 19728
    subatomic particle 19724
      composite particle 19724
        hadron 19724
          baryon 19724
            nucleon 19724
              atomic nucleus 19724
                atom 19724
                  main group element atom 19610
                    p-block element atom 19610
                      carbon group element atom 19501
                        carbon atom 19494
                          organic molecular entity 19494
                            organic molecule 19417
                              organic cyclic compound 19184
                                organic heterocyclic compound 18262
                                  organonitrogen heterocyclic compound 17188
                                    dibenzoquinolizine 354
                                      berberine alkaloid 354
                                        columbamine 8
                                          (S)-tetrahydrocolumbamine 0
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.