Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:loganin
go back to main search page
Accession:CHEBI:15771 term browser browse the term
Definition:An iridoid monoterpenoid with formula C17H26O10 that is isolated from several plant species and exhibits neuroprotective and anti-inflammatory properties.
Synonyms:exact_synonym: methyl (1S,4aS,6S,7R,7aS)-1-(beta-D-glucopyranosyloxy)-6-hydroxy-7-methyl-1,4a,5,6,7,7a-hexahydrocyclopenta[c]pyran-4-carboxylate
 related_synonym: 1-(beta-D-glucopyranosyloxy)-1,4a,5,6,7,7a-hexahydro-6-hydroxy-7-methylcyclopenta[c]pyran-4-carboxylic acid methyl ester;   Formula=C17H26O10;   InChI=1S/C17H26O10/c1-6-9(19)3-7-8(15(23)24-2)5-25-16(11(6)7)27-17-14(22)13(21)12(20)10(4-18)26-17/h5-7,9-14,16-22H,3-4H2,1-2H3/t6-,7+,9-,10+,11+,12+,13-,14+,16-,17-/m0/s1;   InChIKey=AMBQHHVBBHTQBF-UOUCRYGSSA-N;   SMILES=[H][C@]12C[C@H](O)[C@H](C)[C@@]1([H])[C@@H](OC=C2C(=O)OC)O[C@@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1O;   loganoside
 alt_id: CHEBI:132709;   CHEBI:14525;   CHEBI:25069;   CHEBI:6513
 xref: AGR:IND500719365 "Europe PMC";   CAS:18524-94-2 "ChemIDplus";   CAS:18524-94-2 "KEGG COMPOUND";   KEGG:C01433;   KNApSAcK:C00003088;   LIPID_MAPS_instance:LMPR0102070001 "LIPID MAPS"
 xref_mesh: MESH:C059516
 xref: MetaCyc:LOGANIN;   PMID:19666019 "Europe PMC";   PMID:22931211 "Europe PMC";   PMID:25778782 "Europe PMC";   PMID:26231452 "Europe PMC";   PMID:26287995 "Europe PMC";   PMID:26407655 "Europe PMC";   PMID:26591537 "Europe PMC";   PMID:26619955 "Europe PMC";   PMID:26720701 "Europe PMC";   PMID:27106028 "Europe PMC";   PMID:27128898 "Europe PMC";   PMID:27155393 "Europe PMC";   PMID:27241020 "Europe PMC";   PMID:27416474 "Europe PMC";   PMID:27446632 "Europe PMC";   PMID:27534097 "Europe PMC";   PMID:27662601 "Europe PMC";   PMID:27710888 "Europe PMC";   PMID:27739659 "Europe PMC";   Pubchem:91727262 "SUBMITTER";   Reaxys:55724 "Reaxys";   Wikipedia:Loganin


show annotations for term's descendants       view all columns           Sort by:
 
loganin term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ache acetylcholinesterase JBrowse link 12 22,472,358 22,477,052 RGD:6480464
G Ccl2 C-C motif chemokine ligand 2 JBrowse link 10 69,412,065 69,413,863 RGD:6480464
G Cyba cytochrome b-245 alpha chain JBrowse link 19 55,249,634 55,257,824 RGD:6480464
G Hmox1 heme oxygenase 1 JBrowse link 19 14,508,634 14,515,455 RGD:6480464
G Lep leptin JBrowse link 4 56,337,695 56,351,818 RGD:6480464
G Nfe2l2 nuclear factor, erythroid 2-like 2 JBrowse link 3 62,497,568 62,525,146 RGD:6480464
G Nos2 nitric oxide synthase 2 JBrowse link 10 66,188,290 66,221,621 RGD:6480464
G Nox4 NADPH oxidase 4 JBrowse link 1 150,796,359 150,976,186 RGD:6480464
G Ptgs2 prostaglandin-endoperoxide synthase 2 JBrowse link 13 67,351,230 67,356,920 RGD:6480464
G Rela RELA proto-oncogene, NF-kB subunit JBrowse link 1 220,992,770 221,003,249 RGD:6480464

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19669
    role 19613
      application 19235
        anti-inflammatory agent 14907
          loganin 10
            7-deoxyloganin + 0
Path 2
Term Annotations click to browse term
  CHEBI ontology 19669
    subatomic particle 19665
      composite particle 19665
        hadron 19665
          baryon 19665
            nucleon 19665
              atomic nucleus 19665
                atom 19665
                  main group element atom 19545
                    p-block element atom 19545
                      carbon group element atom 19428
                        carbon atom 19420
                          organic molecular entity 19420
                            heteroorganic entity 19003
                              organochalcogen compound 18718
                                organooxygen compound 18629
                                  carbohydrates and carbohydrate derivatives 11703
                                    carbohydrate 11703
                                      monosaccharide 3869
                                        aldose 2372
                                          aldohexose 2012
                                            glucose 1970
                                              D-glucose 1970
                                                D-glucopyranose 1594
                                                  beta-D-glucose 1570
                                                    beta-D-glucoside 1375
                                                      loganin 10
                                                        7-deoxyloganin + 0
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.