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ONTOLOGY REPORT - ANNOTATIONS


Term:trimethylenediamine
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Accession:CHEBI:15725 term browser browse the term
Definition:An alkane-alpha,omega-diamine comprising a propane skeleton with amino substituents at positions 1 and 3.
Synonyms:related_synonym: 1,3-Diaminopropane;   1,3-Propanediamine;   1,3-propylenediamine;   Formula=C3H10N2;   InChI=1S/C3H10N2/c4-2-1-3-5/h1-5H2;   InChIKey=XFNJVJPLKCPIBV-UHFFFAOYSA-N;   Propane-1,3-diamine;   SMILES=NCCCN;   tn
 alt_id: CHEBI:11166;   CHEBI:14901;   CHEBI:26285;   CHEBI:39528;   CHEBI:519
 xref: Beilstein:605277 "Beilstein";   CAS:109-76-2 "ChemIDplus";   CAS:109-76-2 "KEGG COMPOUND";   CAS:109-76-2 "NIST Chemistry WebBook";   Gmelin:1298 "Gmelin";   HMDB:HMDB0000002;   KEGG:C00986;   KNApSAcK:C00007404
 xref_mesh: MESH:C009475
 xref: MetaCyc:CPD-313;   PDBeChem:13D;   PMID:1035932 "Europe PMC";   PMID:10930630 "Europe PMC";   PMID:1238529 "Europe PMC";   PMID:17668437 "Europe PMC";   PMID:4798530 "Europe PMC";   PMID:6042782 "Europe PMC";   PMID:739391 "Europe PMC";   PMID:987217 "Europe PMC";   Reaxys:605277 "Reaxys";   Wikipedia:1\,3-Diaminopropane
 cyclic_relationship: is_conjugate_base_of CHEBI:57484


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trimethylenediamine term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Casp3 caspase 3 JBrowse link 16 48,845,011 48,863,249 RGD:6480464
G Casp9 caspase 9 JBrowse link 5 160,356,211 160,373,774 RGD:6480464
G Cdkn1a cyclin-dependent kinase inhibitor 1A JBrowse link 20 6,348,422 6,358,864 RGD:6480464
G Cycs cytochrome c, somatic JBrowse link 4 80,331,226 80,333,326 RGD:6480464
G Sod1 superoxide dismutase 1 JBrowse link 11 30,363,282 30,368,858 RGD:6480464
G Tp53 tumor protein p53 JBrowse link 10 56,186,299 56,198,449 RGD:6480464

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19679
    role 19623
      application 19246
        reagent 16873
          trimethylenediamine 6
            N-(3-aminopropyl)-N-hydroxyacetamide 0
Path 2
Term Annotations click to browse term
  CHEBI ontology 19679
    subatomic particle 19675
      composite particle 19675
        hadron 19675
          baryon 19675
            nucleon 19675
              atomic nucleus 19675
                atom 19675
                  main group element atom 19555
                    main group molecular entity 19555
                      s-block molecular entity 19336
                        hydrogen molecular entity 19325
                          hydrides 18249
                            inorganic hydride 17113
                              pnictogen hydride 17071
                                nitrogen hydride 16891
                                  azane 16568
                                    ammonia 16565
                                      organic amino compound 16564
                                        polyamine 8074
                                          diamine 8001
                                            primary diamine 5607
                                              alkane-alpha,omega-diamine 3718
                                                trimethylenediamine 6
                                                  N-(3-aminopropyl)-N-hydroxyacetamide 0
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.