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CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.
Term:trimethylenediamine
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Accession:CHEBI:15725 term browser browse the term
Definition:An alkane-alpha,omega-diamine comprising a propane skeleton with amino substituents at positions 1 and 3.
Synonyms:related_synonym: 1,3-Diaminopropane;   1,3-Propanediamine;   1,3-diamino-n-propane;   1,3-propylenediamine;   1,3-trimethylenediamine;   3-aminopropylamine;   Formula=C3H10N2;   InChI=1S/C3H10N2/c4-2-1-3-5/h1-5H2;   InChIKey=XFNJVJPLKCPIBV-UHFFFAOYSA-N;   Propane-1,3-diamine;   SMILES=NCCCN;   alpha,omega-propanediamine;   tn
 alt_id: CHEBI:11166;   CHEBI:14901;   CHEBI:26285;   CHEBI:39528;   CHEBI:519
 xref: Beilstein:605277;   CAS:109-76-2;   Gmelin:1298;   HMDB:HMDB0000002;   KEGG:C00986;   KNApSAcK:C00007404
 xref_mesh: MESH:C009475
 xref: MetaCyc:CPD-313;   PDBeChem:13D;   PMID:1035932;   PMID:10930630;   PMID:1238529;   PMID:17668437;   PMID:4798530;   PMID:6042782;   PMID:739391;   PMID:987217;   Reaxys:605277;   Wikipedia:1\,3-Diaminopropane
 cyclic_relationship: is_conjugate_base_of CHEBI:57484


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trimethylenediamine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casp3 caspase 3 multiple interactions ISO [Copper binds to Isatin binds to trimethylenediamine] which results in increased cleavage of CASP3 protein CTD PMID:17327230 NCBI chr16:45,662,910...45,681,171
Ensembl chr16:45,662,910...45,684,648 		JBrowse link
G Casp9 caspase 9 multiple interactions ISO [Copper binds to Isatin binds to trimethylenediamine] which results in increased cleavage of CASP9 protein CTD PMID:17327230 NCBI chr 5:154,108,872...154,126,628
Ensembl chr 5:154,109,046...154,126,626 		JBrowse link
G Cdkn1a cyclin-dependent kinase inhibitor 1A multiple interactions ISO [Copper binds to Isatin binds to trimethylenediamine] which results in increased expression of CDKN1A protein; Tretinoin inhibits the reaction [[Copper binds to Isatin binds to trimethylenediamine] which results in increased expression of CDKN1A protein] CTD PMID:17327230 NCBI chr20:7,149,177...7,159,727
Ensembl chr20:7,149,217...7,159,585 		JBrowse link
G Cycs cytochrome c, somatic multiple interactions ISO [Copper binds to Isatin binds to trimethylenediamine] which affects the localization of CYCS protein CTD PMID:17327230 NCBI chr 4:79,651,894...79,653,994
Ensembl chr 4:79,651,378...79,654,054
Ensembl chr18:79,651,378...79,654,054 		JBrowse link
G Mpo myeloperoxidase multiple interactions ISO [trimethylenediamine binds to TEMPO] inhibits the reaction [MPO protein results in increased chemical synthesis of Hypochlorous Acid]; [trimethylenediamine binds to TEMPO] inhibits the reaction [MPO protein results in increased degradation of Hydrogen Peroxide]; [trimethylenediamine binds to TEMPO] inhibits the reaction [MPO protein results in increased oxidation of Nitric Oxide]; Heparin inhibits the reaction [[trimethylenediamine binds to TEMPO] inhibits the reaction [MPO protein results in increased chemical synthesis of Hypochlorous Acid]] CTD PMID:34085520 NCBI chr10:72,594,883...72,608,862
Ensembl chr10:72,594,661...72,604,819 		JBrowse link
G Sod1 superoxide dismutase 1 multiple interactions ISO SOD1 protein results in decreased susceptibility to [Copper binds to Isatin binds to trimethylenediamine] CTD PMID:17327230 NCBI chr11:29,456,673...29,462,249
Ensembl chr11:29,456,558...29,462,249 		JBrowse link
G Tp53 tumor protein p53 multiple interactions ISO [Copper binds to Isatin binds to trimethylenediamine] which results in increased expression of TP53 protein; Tretinoin inhibits the reaction [[Copper binds to Isatin binds to trimethylenediamine] which results in increased expression of TP53 protein] CTD PMID:17327230 NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19921
    role 19893
      application 19734
        reagent 18087
          trimethylenediamine 7
            N-(3-aminopropyl)-N-hydroxyacetamide 0
Path 2
Term Annotations click to browse term
  CHEBI ontology 19921
    subatomic particle 19919
      composite particle 19919
        hadron 19919
          baryon 19919
            nucleon 19919
              atomic nucleus 19919
                atom 19919
                  main group element atom 19865
                    main group molecular entity 19865
                      s-block molecular entity 19697
                        hydrogen molecular entity 19678
                          hydrides 19184
                            inorganic hydride 18194
                              pnictogen hydride 18184
                                nitrogen hydride 18096
                                  azane 17900
                                    ammonia 17899
                                      organic amino compound 17899
                                        polyamine 9029
                                          diamine 8964
                                            primary diamine 5706
                                              alkane-alpha,omega-diamine 3783
                                                trimethylenediamine 7
                                                  N-(3-aminopropyl)-N-hydroxyacetamide 0
paths to the root