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The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at The data is made available under the Creative Commons License (CC BY 3.0, For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.

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Accession:CHEBI:15698 term browser browse the term
Definition:A pyrimidine 2'-deoxyribonucleoside having cytosine as the nucleobase.
Synonyms:related_synonym: 4-amino-1-[(2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl]pyrimidin-2(1H)-one;   Deoxycytidine;   Formula=C9H13N3O4;   InChI=1S/C9H13N3O4/c10-7-1-2-12(9(15)11-7)8-3-5(14)6(4-13)16-8/h1-2,5-6,8,13-14H,3-4H2,(H2,10,11,15)/t5-,6+,8+/m0/s1;   InChIKey=CKTSBUTUHBMZGZ-SHYZEUOFSA-N;   SMILES=Nc1ccn([C@H]2C[C@H](O)[C@@H](CO)O2)c(=O)n1;   dC;   dCYD
 alt_id: CHEBI:19240;   CHEBI:41417;   CHEBI:41430;   CHEBI:41806;   CHEBI:4407
 xref: Beilstein:87567;   CAS:951-77-9;   DrugBank:DB02594;   Gmelin:1321747;   HMDB:HMDB0000014;   KEGG:C00881
 xref_mesh: MESH:D003841
 xref: MetaCyc:DEOXYCYTIDINE;   PDBeChem:DCZ;   PMID:15778433;   Reaxys:87567;   Wikipedia:Deoxycytidine

show annotations for term's descendants           Sort by:
2'-deoxycytidine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casp3 caspase 3 multiple interactions ISO Deoxycytidine inhibits the reaction [[9-deaza-9-(3-thienylmethyl)guanine co-treated with Deoxyguanosine] results in increased activity of CASP3 protein] CTD PMID:9297556, PMID:9403342 NCBI chr16:48,845,011...48,863,249
Ensembl chr16:48,845,012...48,863,204
JBrowse link
G Dck deoxycytidine kinase affects binding ISO Deoxycytidine binds to DCK protein CTD PMID:17530837 NCBI chr14:20,935,442...20,952,939
Ensembl chr14:20,935,369...20,953,095
JBrowse link
G Slc28a1 solute carrier family 28 member 1 increases transport ISO SLC28A1 protein results in increased transport of Deoxycytidine CTD PMID:10772724 NCBI chr 1:142,948,942...142,992,410
Ensembl chr 1:142,950,540...142,992,615
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19816
    role 19764
      biological role 19764
        biochemical role 19313
          metabolite 19294
            eukaryotic metabolite 18943
              fungal metabolite 17421
                Saccharomyces cerevisiae metabolite 16485
                  2'-deoxycytidine 3
                    5-methyl-2'-deoxycytidine 0
Path 2
Term Annotations click to browse term
  CHEBI ontology 19816
    subatomic particle 19814
      composite particle 19814
        hadron 19814
          baryon 19814
            nucleon 19814
              atomic nucleus 19814
                atom 19814
                  main group element atom 19702
                    p-block element atom 19702
                      carbon group element atom 19608
                        carbon atom 19597
                          organic molecular entity 19597
                            heteroorganic entity 19184
                              organochalcogen compound 18894
                                organooxygen compound 18816
                                  carbohydrates and carbohydrate derivatives 12191
                                    carbohydrate 12191
                                      carbohydrate derivative 11814
                                        glycosyl compound 10856
                                          N-glycosyl compound 5340
                                            nucleoside 5200
                                              deoxyribonucleoside 2728
                                                2'-deoxyribonucleoside 2210
                                                  pyrimidine 2'-deoxyribonucleoside 337
                                                    2'-deoxycytidine 3
                                                      5-methyl-2'-deoxycytidine 0
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.