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CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.
Term:squalene
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Accession:CHEBI:15440 term browser browse the term
Definition:A triterpene consisting of 2,6,10,15,19,23-hexamethyltetracosane having six double bonds at the 2-, 6-, 10-, 14-, 18- and 22-positions with (all-E)-configuration.
Synonyms:exact_synonym: (6E,10E,14E,18E)-2,6,10,15,19,23-hexamethyltetracosa-2,6,10,14,18,22-hexaene
 related_synonym: (all-E)-2,6,10,15,19,23-hexamethyl-2,6,10,14,18,22-tetracosahexaene;   Formula=C30H50;   InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+;   InChIKey=YYGNTYWPHWGJRM-AAJYLUCBSA-N;   SMILES=CC(C)=CCC\\C(C)=C\\CC\\C(C)=C\\CC\\C=C(/C)CC\\C=C(/C)CCC=C(C)C;   Spinacene;   Supraene
 alt_id: CHEBI:10795;   CHEBI:10843;   CHEBI:15104;   CHEBI:26746;   CHEBI:9245
 xref: Beilstein:1728920;   CAS:111-02-4;   KEGG:C00751;   KNApSAcK:C00003755;   LIPID_MAPS_instance:LMPR0106010002
 xref_mesh: MESH:D013185
 xref: PMID:16341241;   PMID:24362891

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squalene term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pon1 paraoxonase 1 multiple interactions ISO Squalene inhibits the reaction [Simvastatin results in increased expression of PON1 mRNA] CTD PMID:14500290 NCBI chr 4:30,249,749...30,276,297
Ensembl chr 4:30,249,742...30,276,372 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19853
    role 19804
      biological role 19804
        biochemical role 19339
          metabolite 19319
            eukaryotic metabolite 18976
              plant metabolite 17450
                squalene 1
                  (R)-12-hydroxysqualene 0
                  (S)-2,3-epoxysqualene 0
                  2,3-epoxysqualene + 0
                  3,22-dimethyl-1,2,23,24-tetradehydro-2,3,22,23-tetrahydrosqualene 0
                  3-methyl-1,2-didehydro-2,3-dihydrosqualene 0
                  squalene triterpenoid + 0
                  tetrahydroxysqualene 0
Path 2
Term Annotations click to browse term
  CHEBI ontology 19853
    subatomic particle 19851
      composite particle 19851
        hadron 19851
          baryon 19851
            nucleon 19851
              atomic nucleus 19851
                atom 19851
                  main group element atom 19744
                    main group molecular entity 19744
                      s-block molecular entity 19491
                        hydrogen molecular entity 19483
                          hydrides 18748
                            organic hydride 18302
                              organic fundamental parent 18302
                                hydrocarbon 18030
                                  terpene 10277
                                    triterpene 674
                                      squalene 1
                                        (R)-12-hydroxysqualene 0
                                        (S)-2,3-epoxysqualene 0
                                        2,3-epoxysqualene + 0
                                        3,22-dimethyl-1,2,23,24-tetradehydro-2,3,22,23-tetrahydrosqualene 0
                                        3-methyl-1,2-didehydro-2,3-dihydrosqualene 0
                                        squalene triterpenoid + 0
                                        tetrahydroxysqualene 0
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