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CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.

Term:squalene
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Accession:CHEBI:15440 term browser browse the term
Definition:A triterpene consisting of 2,6,10,15,19,23-hexamethyltetracosane having six double bonds at the 2-, 6-, 10-, 14-, 18- and 22-positions with (all-E)-configuration.
Synonyms:exact_synonym: (6E,10E,14E,18E)-2,6,10,15,19,23-hexamethyltetracosa-2,6,10,14,18,22-hexaene
 related_synonym: (all-E)-2,6,10,15,19,23-hexamethyl-2,6,10,14,18,22-tetracosahexaene;   Formula=C30H50;   InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+;   InChIKey=YYGNTYWPHWGJRM-AAJYLUCBSA-N;   SMILES=CC(C)=CCC\\C(C)=C\\CC\\C(C)=C\\CC\\C=C(/C)CC\\C=C(/C)CCC=C(C)C;   Spinacene;   Supraene
 alt_id: CHEBI:10795;   CHEBI:10843;   CHEBI:15104;   CHEBI:26746;   CHEBI:9245
 xref: Beilstein:1728920;   CAS:111-02-4;   KEGG:C00751;   KNApSAcK:C00003755;   LIPID_MAPS_instance:LMPR0106010002
 xref_mesh: MESH:D013185
 xref: PMID:16341241;   PMID:24362891


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squalene term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pon1 paraoxonase 1 multiple interactions ISO Squalene inhibits the reaction [Simvastatin results in increased expression of PON1 mRNA] CTD PMID:14500290 NCBI chr 4:30,249,749...30,276,297
Ensembl chr 4:30,249,742...30,276,372
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Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19810
    role 19758
      biological role 19758
        biochemical role 19304
          metabolite 19285
            eukaryotic metabolite 18934
              plant metabolite 17422
                squalene 1
                  (R)-12-hydroxysqualene 0
                  (S)-2,3-epoxysqualene 0
                  2,3-epoxysqualene + 0
                  3,22-dimethyl-1,2,23,24-tetradehydro-2,3,22,23-tetrahydrosqualene 0
                  3-methyl-1,2-didehydro-2,3-dihydrosqualene 0
                  squalene triterpenoid + 0
                  tetrahydroxysqualene 0
Path 2
Term Annotations click to browse term
  CHEBI ontology 19810
    subatomic particle 19808
      composite particle 19808
        hadron 19808
          baryon 19808
            nucleon 19808
              atomic nucleus 19808
                atom 19808
                  main group element atom 19696
                    main group molecular entity 19696
                      s-block molecular entity 19456
                        hydrogen molecular entity 19447
                          hydrides 18703
                            organic hydride 18265
                              organic fundamental parent 18265
                                hydrocarbon 17986
                                  terpene 9609
                                    triterpene 666
                                      squalene 1
                                        (R)-12-hydroxysqualene 0
                                        (S)-2,3-epoxysqualene 0
                                        2,3-epoxysqualene + 0
                                        3,22-dimethyl-1,2,23,24-tetradehydro-2,3,22,23-tetrahydrosqualene 0
                                        3-methyl-1,2-didehydro-2,3-dihydrosqualene 0
                                        squalene triterpenoid + 0
                                        tetrahydroxysqualene 0
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