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ONTOLOGY REPORT - ANNOTATIONS


Term:squalene
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Accession:CHEBI:15440 term browser browse the term
Definition:A triterpene consisting of 2,6,10,15,19,23-hexamethyltetracosane having six double bonds at the 2-, 6-, 10-, 14-, 18- and 22-positions with (all-E)-configuration.
Synonyms:exact_synonym: (6E,10E,14E,18E)-2,6,10,15,19,23-hexamethyltetracosa-2,6,10,14,18,22-hexaene
 related_synonym: (all-E)-2,6,10,15,19,23-hexamethyl-2,6,10,14,18,22-tetracosahexaene;   Formula=C30H50;   InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+;   InChIKey=YYGNTYWPHWGJRM-AAJYLUCBSA-N;   SMILES=CC(C)=CCC\\C(C)=C\\CC\\C(C)=C\\CC\\C=C(/C)CC\\C=C(/C)CCC=C(C)C;   Spinacene;   Supraene
 alt_id: CHEBI:10795;   CHEBI:10843;   CHEBI:15104;   CHEBI:26746;   CHEBI:9245
 xref: Beilstein:1728920 "Beilstein";   CAS:111-02-4 "ChemIDplus";   CAS:111-02-4 "KEGG COMPOUND";   CAS:111-02-4 "NIST Chemistry WebBook";   KEGG:C00751;   KNApSAcK:C00003755;   LIPID_MAPS_instance:LMPR0106010002 "LIPID MAPS"
 xref_mesh: MESH:D013185
 xref: PMID:16341241 "Europe PMC";   PMID:24362891 "Europe PMC"


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squalene term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pon1 paraoxonase 1 JBrowse link 4 30,249,749 30,276,297 RGD:6480464

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19657
    role 19601
      biological role 19599
        biochemical role 19130
          metabolite 19098
            eukaryotic metabolite 18740
              plant metabolite 17040
                squalene 1
                  (R)-12-hydroxysqualene 0
                  (S)-2,3-epoxysqualene 0
                  2,3-epoxysqualene + 0
                  3,22-dimethyl-1,2,23,24-tetradehydro-2,3,22,23-tetrahydrosqualene 0
                  3-methyl-1,2-didehydro-2,3-dihydrosqualene 0
                  squalene triterpenoid + 0
                  tetrahydroxysqualene 0
Path 2
Term Annotations click to browse term
  CHEBI ontology 19657
    subatomic particle 19653
      composite particle 19653
        hadron 19653
          baryon 19653
            nucleon 19653
              atomic nucleus 19653
                atom 19653
                  main group element atom 19534
                    main group molecular entity 19534
                      s-block molecular entity 19319
                        hydrogen molecular entity 19310
                          hydrides 18237
                            organic hydride 17526
                              organic fundamental parent 17526
                                hydrocarbon 16933
                                  terpene 9231
                                    triterpene 636
                                      squalene 1
                                        (R)-12-hydroxysqualene 0
                                        (S)-2,3-epoxysqualene 0
                                        2,3-epoxysqualene + 0
                                        3,22-dimethyl-1,2,23,24-tetradehydro-2,3,22,23-tetrahydrosqualene 0
                                        3-methyl-1,2-didehydro-2,3-dihydrosqualene 0
                                        squalene triterpenoid + 0
                                        tetrahydroxysqualene 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.