Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.

Term:sophoroside
go back to main search page
Accession:CHEBI:145470 term browser browse the term
Definition:Any glycoside of sophorose (2-O-beta-D-glucopyranosyl-D-glucopyranose).
Synonyms:related_synonym: Formula=C12H21O11R;   SMILES=O(C1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O)O)O[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O)O)O)*;   sophorosides



show annotations for term's descendants           Sort by:
 
kaempferol 3-O-beta-D-glucosyl-(1->2)-beta-D-glucoside term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hmgb1 high mobility group box 1 multiple interactions
decreases response to substance
ISO kaempferol 3-O-sophoroside inhibits the reaction [HMGB1 protein results in increased expression of ICAM1 protein]; kaempferol 3-O-sophoroside inhibits the reaction [HMGB1 protein results in increased expression of SELE protein]; kaempferol 3-O-sophoroside inhibits the reaction [HMGB1 protein results in increased expression of TLR2 protein]; kaempferol 3-O-sophoroside inhibits the reaction [HMGB1 protein results in increased expression of TLR4 protein]; kaempferol 3-O-sophoroside inhibits the reaction [HMGB1 protein results in increased expression of VCAM1 protein]; kaempferol 3-O-sophoroside inhibits the reaction [Lipopolysaccharides results in increased secretion of HMGB1 protein]
kaempferol 3-O-sophoroside results in decreased susceptibility to HMGB1 protein
CTD PMID:22178603 NCBI chr12:5,973,062...5,978,565 JBrowse link
G Icam1 intercellular adhesion molecule 1 multiple interactions ISO kaempferol 3-O-sophoroside inhibits the reaction [HMGB1 protein results in increased expression of ICAM1 protein] CTD PMID:22178603 NCBI chr 8:19,553,063...19,565,438
Ensembl chr 8:19,553,645...19,565,438
JBrowse link
G Sele selectin E multiple interactions ISO kaempferol 3-O-sophoroside inhibits the reaction [HMGB1 protein results in increased expression of SELE protein] CTD PMID:22178603 NCBI chr13:76,402,841...76,412,741
Ensembl chr13:76,403,304...76,412,741
JBrowse link
G Tlr2 toll-like receptor 2 multiple interactions ISO kaempferol 3-O-sophoroside inhibits the reaction [HMGB1 protein results in increased expression of TLR2 protein] CTD PMID:22178603 NCBI chr 2:169,200,620...169,206,819
Ensembl chr 2:169,197,419...169,206,630
JBrowse link
G Tlr4 toll-like receptor 4 multiple interactions ISO kaempferol 3-O-sophoroside inhibits the reaction [HMGB1 protein results in increased expression of TLR4 protein] CTD PMID:22178603 NCBI chr 5:80,145,867...80,159,501
Ensembl chr 5:80,145,826...80,159,628
JBrowse link
G Vcam1 vascular cell adhesion molecule 1 multiple interactions ISO kaempferol 3-O-sophoroside inhibits the reaction [HMGB1 protein results in increased expression of VCAM1 protein] CTD PMID:22178603 NCBI chr 2:204,038,120...204,057,852
Ensembl chr 2:204,038,114...204,057,958
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19800
    role 19751
      biological role 19751
        biochemical role 19368
          metabolite 19344
            eukaryotic metabolite 19033
              plant metabolite 17450
                sophorose 6
                  sophoroside 6
                    (9Z)-17-hydroxyoctadec-9-enoic acid 17-O-sophoroside 0
                    13-sophorosyloxydocosanoic acid 0
                    4-nitrophenyl beta-sophoroside 0
                    Bougainvillein-r-I 0
                    anthocyanidin 3-O-sophoroside + 0
                    attenoside 0
                    kaempferol 3-O-beta-D-glucosyl-(1->2)-beta-D-glucoside 6
                    lyciumoside II 0
                    methyl 13-sophorosyloxydocosanoate 0
                    myricetin 3-O-beta-D-glucosyl-(1->2)-beta-D-glucoside 0
                    quercetin 3-O-beta-D-glucosyl-(1->2)-beta-D-glucoside + 0
                    rebaudioside D + 0
                    rebaudioside E + 0
Path 2
Term Annotations click to browse term
  CHEBI ontology 19800
    subatomic particle 19799
      composite particle 19799
        hadron 19799
          baryon 19799
            nucleon 19799
              atomic nucleus 19799
                atom 19799
                  main group element atom 19698
                    p-block element atom 19698
                      carbon group element atom 19619
                        carbon atom 19609
                          organic molecular entity 19609
                            heteroorganic entity 19278
                              organochalcogen compound 19052
                                organooxygen compound 18998
                                  carbohydrates and carbohydrate derivatives 12342
                                    carbohydrate 12342
                                      oligosaccharide 573
                                        disaccharide 481
                                          glycosylglucose 195
                                            sophorose 6
                                              sophoroside 6
                                                (9Z)-17-hydroxyoctadec-9-enoic acid 17-O-sophoroside 0
                                                13-sophorosyloxydocosanoic acid 0
                                                4-nitrophenyl beta-sophoroside 0
                                                Bougainvillein-r-I 0
                                                anthocyanidin 3-O-sophoroside + 0
                                                attenoside 0
                                                kaempferol 3-O-beta-D-glucosyl-(1->2)-beta-D-glucoside 6
                                                lyciumoside II 0
                                                methyl 13-sophorosyloxydocosanoate 0
                                                myricetin 3-O-beta-D-glucosyl-(1->2)-beta-D-glucoside 0
                                                quercetin 3-O-beta-D-glucosyl-(1->2)-beta-D-glucoside + 0
                                                rebaudioside D + 0
                                                rebaudioside E + 0
paths to the root