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CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.

Term:Arabidopsis thaliana metabolite
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Accession:CHEBI:140602 term browser browse the term
Definition:Any plant metabolite that is produced by Arabidopsis thaliana.
Synonyms:related_synonym: Arabidopsis thaliana metabolites
 xref: Wikipedia:Arabidopsis_thaliana



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dGTP term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Samhd1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 decreases abundance ISO SAMHD1 protein results in decreased abundance of deoxyguanosine triphosphate CTD PMID:26342080 NCBI chr 3:145,761,549...145,794,420
Ensembl chr 3:145,761,558...145,794,386
JBrowse link
fraxetin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bax BCL2 associated X, apoptosis regulator decreases expression
increases expression
ISO fraxetin results in decreased expression of BAX protein
Fraxetin increases expression of BAX protein in colorectum
CTD PMID:15996779 PMID:32504672 RGD:125097526 NCBI chr 1:95,940,001...95,945,407
Ensembl chr 1:95,938,808...95,945,368
JBrowse link
G Bcl2 BCL2, apoptosis regulator decreases expression ISO Fraxetin decreases expression of BCL2 protein in colorectum RGD PMID:32504672 RGD:125097526 NCBI chr13:22,689,783...22,853,920 JBrowse link
G Casp3 caspase 3 decreases activity ISO fraxetin results in decreased activity of CASP3 protein CTD PMID:15996779 NCBI chr16:45,662,910...45,681,171
Ensembl chr16:45,662,910...45,684,648
JBrowse link
G Casp9 caspase 9 decreases activity ISO fraxetin results in decreased activity of CASP9 protein CTD PMID:15996779 NCBI chr 5:154,108,872...154,126,628
Ensembl chr 5:154,109,046...154,126,626
JBrowse link
G Cat catalase multiple interactions ISO fraxetin inhibits the reaction [Rotenone results in increased expression of and results in increased activity of CAT protein] CTD PMID:15904944 NCBI chr 3:89,842,393...89,874,577
Ensembl chr 3:89,842,399...89,874,478
JBrowse link
G Ccna2 cyclin A2 decreases expression ISO Fraxetin decreases expression of CCNA2 protein in colorectum RGD PMID:32504672 RGD:125097526 NCBI chr 2:119,427,239...119,433,645
Ensembl chr 2:119,426,089...119,433,577
JBrowse link
G Ccne1 cyclin E1 decreases expression ISO Fraxetin decreases expression of CCNE1 protein in colorectum RGD PMID:32504672 RGD:125097526 NCBI chr 1:90,781,947...90,791,188
Ensembl chr 1:90,781,949...90,791,101
JBrowse link
G Cdk2 cyclin dependent kinase 2 decreases expression ISO Fraxetin decreases expression of CDK2 protein in colorectum RGD PMID:32504672 RGD:125097526 NCBI chr 7:1,129,878...1,137,431
Ensembl chr 7:1,129,811...1,137,403
JBrowse link
G Cycs cytochrome c, somatic affects localization ISO fraxetin affects the localization of CYCS protein CTD PMID:15996779 NCBI chr 4:79,651,894...79,653,994
Ensembl chr 4:79,651,378...79,654,054
JBrowse link
G Il6 interleukin 6 multiple interactions ISO fraxetin inhibits the reaction [[Tetradecanoylphorbol Acetate co-treated with Calcimycin] results in increased expression of IL6 mRNA] CTD PMID:30496664 NCBI chr 4:5,214,602...5,219,178
Ensembl chr 4:5,213,394...5,219,178
JBrowse link
G Jak2 Janus kinase 2 decreases phosphorylation ISO Fraxetin decreases phosphorylation of JAK2 protein in colorectum RGD PMID:32504672 RGD:125097526 NCBI chr 1:226,995,334...227,054,381
Ensembl chr 1:226,995,334...227,054,189
JBrowse link
G Skp2 S-phase kinase associated protein 2 decreases expression ISO Fraxetin decreases expression of SKP2 mRNA and protein in colorectum RGD PMID:32504672 RGD:125097526 NCBI chr 2:58,161,226...58,189,293
Ensembl chr 2:58,161,229...58,189,338
JBrowse link
G Sod2 superoxide dismutase 2 multiple interactions ISO fraxetin inhibits the reaction [Rotenone results in increased expression of and results in increased activity of SOD2 protein] CTD PMID:15904944 NCBI chr 1:47,638,318...47,645,163
Ensembl chr 1:47,636,528...47,645,189
JBrowse link
G Stat3 signal transducer and activator of transcription 3 decreases phosphorylation ISO Fraxetin decreases phosphorylation of STAT3 protein in colorectum RGD PMID:32504672 RGD:125097526 NCBI chr10:85,811,206...85,863,057
Ensembl chr10:85,811,218...85,863,057
JBrowse link
G Tnf tumor necrosis factor multiple interactions ISO fraxetin inhibits the reaction [[Tetradecanoylphorbol Acetate co-treated with Calcimycin] results in increased expression of TNF mRNA] CTD PMID:30496664 NCBI chr20:3,622,011...3,624,629
Ensembl chr20:3,622,011...3,624,629
JBrowse link

Term paths to the root
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Term Annotations click to browse term
  CHEBI ontology 19808
    role 19757
      biological role 19757
        biochemical role 19377
          metabolite 19352
            eukaryotic metabolite 19040
              plant metabolite 17452
                Arabidopsis thaliana metabolite 16
                  (-)-retigeranin B 0
                  (4-methoxyindol-3-ylmethyl)isothiocyanate 0
                  1-(2-oxindole-3-acetyl)-beta-D-glucose 0
                  1-isothiocyanato-6-(methylsulfanyl)hexane 0
                  2,5-dihydroxybenzoic acid 2-O-beta-D-glucoside 0
                  2-O-(beta-D-glucosyl)glycerol 0
                  2-hydroxy-3-butenyldesulfoglucosinolate 0
                  2-hydroxylinoleic acid 0
                  2-trans-4'-dihydroabscisic acid 0
                  26-hydroxybrassinolide 0
                  3-(isothiocyanatomethyl)-1-methoxyindole 0
                  3-butenyldesulfoglucosinolate 0
                  4-hydroxy-indole-3-carbonyl nitrile 0
                  4-methoxy-3-indolylmethylamine 0
                  4-methoxy-3-indolylmethylamine(1+) 0
                  5-(methylthio)pentyldesulfoglucosinolate 0
                  6-(methylthio)hexanonitrile oxide 0
                  6-(methylthio)hexyldesulfoglucosinolate 0
                  6-hydroxynicotinic acid 0
                  6-methoxycamalexin 0
                  6-sinapoylglucoraphenin 0
                  7-(alpha-D-glucosyl)dihydrozeatin 0
                  7-(methylthio)heptanonitrile oxide 0
                  7-(methylthio)heptyldesulfoglucosinolate 0
                  7-hydroxy-2-oxindole-3-acetic acid beta-D-glucoside 0
                  8-(methylthio)octylisothiocyanate 0
                  N-[(6-hydroxyindol-3-yl)acetyl]phenylalanine 0
                  S-[9-(methylthio)nonylhydroximoyl]-L-cysteine 0
                  all-cis-hexadeca-7,10,13-trienoate phytyl ester 0
                  caprate phytyl ester 0
                  coniferaldehyde beta-D-glucoside 0
                  dGTP 1
                  dUTP + 0
                  desulfoglucoiberin 0
                  desulfogluconasturtiin 0
                  desulfosinigrin 0
                  dihydrozeatin-9-N-glucoside-O-glucoside 0
                  fraxetin + 15
                  glucohesperin 0
                  indole-3-carbonyl nitrile 0
                  laurate phytyl ester 0
                  myristate phytyl ester 0
                  palmitate phytyl ester 0
                  raphanusamic acid 0
                  sideretin (reduced form) + 0
                  thiamine(1+) monophosphate + 0
                  thiamine(1+) triphosphate 0
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