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CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.

Term:all-trans-4-oxoretinal
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Accession:CHEBI:139347 term browser browse the term
Definition:A retinoid that is all-trans-retinal carrying an oxo substituent at position 4 on the cyclohexenyl ring.
Synonyms:exact_synonym: (2E,4E,6E,8E)-3,7-dimethyl-9-(2,6,6-trimethyl-3-oxocyclohex-1-en-1-yl)nona-2,4,6,8-tetraenal
 related_synonym: 4-Oxoretinaldehyde;   4-ketoretinal;   4-oxoretinal;   Formula=C20H26O2;   InChI=1S/C20H26O2/c1-15(7-6-8-16(2)12-14-21)9-10-18-17(3)19(22)11-13-20(18,4)5/h6-10,12,14H,11,13H2,1-5H3/b8-6+,10-9+,15-7+,16-12+;   InChIKey=PLILDISEFZJECC-RMWYGNQTSA-N;   SMILES=C1(C)(C)C(\\C=C\\C(=C\\C=C\\C(=C\\C(=O)[H])\\C)\\C)=C(C)C(CC1)=O;   all-trans-4-ketoretinal;   all-trans-4-oxo-retinal
 xref: CAS:33532-44-4
 xref_mesh: MESH:C099660
 xref: PMID:10415093;   PMID:12528465;   PMID:15369820;   PMID:1775535;   PMID:17943179;   PMID:8643496;   Reaxys:2508352


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all-trans-4-oxoretinal term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akr1b1 aldo-keto reductase family 1 member B increases reduction ISO AKR1B1 protein results in increased reduction of 4-oxoretinaldehyde CTD PMID:19014918 NCBI chr 4:61,706,866...61,720,959
Ensembl chr 4:61,706,864...61,720,956
JBrowse link
G Akr1b10 aldo-keto reductase family 1 member B10 increases reduction ISO AKR1B10 protein results in increased reduction of 4-oxoretinaldehyde CTD PMID:19014918 NCBI chr 4:61,813,265...61,830,371
Ensembl chr 4:61,771,970...61,828,657
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19787
    role 19734
      biological role 19734
        inhibitor 18223
          gap junctional intercellular communication inhibitor 33
            all-trans-retinal 33
              all-trans-4-oxoretinal 2
Path 2
Term Annotations click to browse term
  CHEBI ontology 19787
    subatomic particle 19784
      composite particle 19784
        hadron 19784
          baryon 19784
            nucleon 19784
              atomic nucleus 19784
                atom 19784
                  main group element atom 19672
                    p-block element atom 19672
                      carbon group element atom 19574
                        carbon atom 19563
                          organic molecular entity 19563
                            organic group 18495
                              organic divalent group 18488
                                organodiyl group 18488
                                  carbonyl group 18391
                                    carbonyl compound 18391
                                      carboxylic acid 18061
                                        carboacyl group 17348
                                          univalent carboacyl group 17348
                                            formyl group 7847
                                              aldehyde 7847
                                                alpha,beta-unsaturated aldehyde 1297
                                                  enal 1297
                                                    retinal 39
                                                      all-trans-retinal 33
                                                        all-trans-4-oxoretinal 2
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