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CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.

Term:carbocyclic thromboxane A2
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Accession:CHEBI:139043 term browser browse the term
Definition:A member of the class of thromboxanes that is thromboxane A2 in which the bridging oxygen has been replaced by a methylene group.
Synonyms:exact_synonym: (5Z)-7-{(1R,3R,4S,5R)-3-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-2-oxabicyclo[3.1.1]heptan-4-yl}hept-5-enoic acid
 related_synonym: 9alpha,11alpha-methylene thromboxane A2;   9alpha,11alpha-methylene-TXA2;   Formula=C21H34O4;   InChI=1S/C21H34O4/c1-2-3-6-9-17(22)12-13-20-19(16-14-18(15-16)25-20)10-7-4-5-8-11-21(23)24/h4,7,12-13,16-20,22H,2-3,5-6,8-11,14-15H2,1H3,(H,23,24)/b7-4-,13-12+/t16-,17-,18+,19-,20+/m0/s1;   InChIKey=VQUUFWNZZIMDBR-SXNJQZKASA-N;   SMILES=C1[C@H]2[C@@H]([C@H](O[C@@H]1C2)/C=C/[C@H](CCCCC)O)C/C=C\\CCCC(=O)O;   carbocyclic TXA2
 xref_mesh: MESH:C024587
 xref: PMID:10542977;   PMID:11483590;   PMID:12614148;   PMID:12628222;   PMID:1561230;   PMID:15789615;   PMID:16093422;   PMID:16896186;   PMID:17109692;   PMID:1838696;   PMID:3387452;   PMID:3512276;   PMID:6754126;   PMID:6960809;   PMID:7591017;   PMID:7693541;   PMID:7966472;   PMID:8135127;   PMID:8831114;   PMID:9014151;   PMID:9342927
 cyclic_relationship: is_conjugate_acid_of CHEBI:138322



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carbocyclic thromboxane A2 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tnfrsf11b TNF receptor superfamily member 11B decreases expression ISO thromboxane A2, carbocyclic results in decreased expression of TNFRSF11B mRNA CTD PMID:18264100 NCBI chr 7:85,566,520...85,594,526
Ensembl chr 7:85,566,520...85,594,538
JBrowse link
G Tnfsf11 TNF superfamily member 11 increases expression ISO thromboxane A2, carbocyclic results in increased expression of TNFSF11 mRNA CTD PMID:18264100 NCBI chr15:53,674,990...53,705,171
Ensembl chr15:53,673,877...53,705,445
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 20059
    role 20009
      biological role 20008
        pharmacological role 19070
          agonist 18498
            thromboxane A2 agonist 2
              carbocyclic thromboxane A2 2
                18-hydroxycarbocyclic thromboxane A2 0
                19-hydroxycarbocyclic thromboxane A2 0
Path 2
Term Annotations click to browse term
  CHEBI ontology 20059
    subatomic particle 20056
      composite particle 20056
        hadron 20056
          baryon 20056
            nucleon 20056
              atomic nucleus 20056
                atom 20056
                  main group element atom 19956
                    p-block element atom 19956
                      carbon group element atom 19882
                        carbon atom 19873
                          organic molecular entity 19873
                            organic group 18943
                              organic divalent group 18928
                                organodiyl group 18928
                                  carbonyl group 18877
                                    carbonyl compound 18877
                                      carboxylic acid 18565
                                        monocarboxylic acid 17748
                                          fatty acid 16149
                                            fatty acid derivative 1056
                                              icosanoid 465
                                                prostanoid 402
                                                  thromboxane 15
                                                    thromboxanes A 9
                                                      thromboxane A2 9
                                                        carbocyclic thromboxane A2 2
                                                          18-hydroxycarbocyclic thromboxane A2 0
                                                          19-hydroxycarbocyclic thromboxane A2 0
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