Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   


go back to main search page
Accession:CHEBI:131825 term browser browse the term
Definition:An organic heterotetracyclic compound obtained by intramolecular formation of a C-C bond between positions 8 and 5' of 2'-deoxyadenosine.
Synonyms:exact_synonym: (6R,7S,8S,10R)-4-amino-7,8,9,10-tetrahydro-6H-7,10-epoxyazepino[1,2-e]purine-6,8-diol
 related_synonym: 2'-Deoxy-8,5'-cycloadenosine;   8,5'-Cda;   Formula=C10H11N5O3;   InChI=1S/C10H11N5O3/c11-8-5-9(13-2-12-8)15-4-1-3(16)7(18-4)6(17)10(15)14-5/h2-4,6-7,16-17H,1H2,(H2,11,12,13)/t3-,4+,6-,7-/m0/s1;   InChIKey=MBVGIEDXZGVICG-FXZMZVCPSA-N;   SMILES=[C@H]12N3C=4N=CN=C(C4N=C3[C@H]([C@]([C@H](C1)O)(O2)[H])O)N;   cyclo-dA;   cyclodA
 xref: CAS:117182-88-4 "ChemIDplus"
 xref_mesh: MESH:C056752
 xref: PMID:22817898 "Europe PMC";   PMID:23961697 "Europe PMC";   PMID:24471831 "Europe PMC";   PMID:25034731 "Europe PMC";   PMID:25605892 "Europe PMC";   PMID:26344223 "Europe PMC";   Reaxys:8118367 "Reaxys"

show annotations for term's descendants       view all columns           Sort by:
8,5'-cyclo-2'-deoxyadenosine term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Neil1 nei-like DNA glycosylase 1 JBrowse link 8 61,817,258 61,824,023 RGD:6480464

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19679
    role 19623
      application 19246
        refrigerant 16995
          ammonia 16565
            organic amino compound 16564
              aromatic amine 13591
                8,5'-cyclo-2'-deoxyadenosine 1
Path 2
Term Annotations click to browse term
  CHEBI ontology 19679
    subatomic particle 19675
      composite particle 19675
        hadron 19675
          baryon 19675
            nucleon 19675
              atomic nucleus 19675
                atom 19675
                  main group element atom 19555
                    p-block element atom 19555
                      carbon group element atom 19438
                        carbon atom 19430
                          organic molecular entity 19430
                            heteroorganic entity 19012
                              organochalcogen compound 18727
                                organooxygen compound 18635
                                  carbohydrates and carbohydrate derivatives 11733
                                    carbohydrate 11733
                                      carbohydrate derivative 11346
                                        glycosyl compound 10293
                                          N-glycosyl compound 4205
                                            nucleoside 4029
                                              deoxyribonucleoside 982
                                                2'-deoxyribonucleoside 310
                                                  purine 2'-deoxyribonucleoside 32
                                                    purines 2'-deoxy-D-ribonucleoside 13
                                                      2'-deoxyadenosine 8
                                                        8,5'-cyclo-2'-deoxyadenosine 1
paths to the root


RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.