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ONTOLOGY REPORT - ANNOTATIONS


Term:sophorose
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Accession:CHEBI:1230 term browser browse the term
Definition:A glycosylglucose that is D-glucopyranose attached to a beta-D-glucopyranosyl unit at position 2 via a glycosidic linkage.
Synonyms:related_synonym: 2-O-beta-D-Glucopyranosyl-D-glucopyranose;   2-O-beta-D-glucopyranosyl-D-glucose;   Formula=C12H22O11;   InChI=1S/C12H22O11/c13-1-3-6(16)8(18)10(11(20)21-3)23-12-9(19)7(17)5(15)4(2-14)22-12/h3-20H,1-2H2/t3-,4-,5-,6-,7+,8+,9-,10-,11?,12+/m1/s1;   InChIKey=HIWPGCMGAMJNRG-RTPHMHGBSA-N;   SMILES=OC1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O)O)O[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O)O)O;   beta-D-Glc-(1->2)-D-Glc;   beta-D-glucopyranosyl-(1->2)-D-glucopyranose
 xref: CAS:20429-79-2 "ChemIDplus";   KEGG:C08250;   KNApSAcK:C00001149;   MetaCyc:CPD-13242;   PMID:14469205 "Europe PMC";   PMID:24655731 "Europe PMC";   PMID:39061 "Europe PMC";   Wikipedia:Sophorose


show annotations for term's descendants       view all columns           Sort by:
 
kaempferol 3-O-beta-D-glucosyl-(1->2)-beta-D-glucoside term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hmgb1 high mobility group box 1 JBrowse link 12 7,082,529 7,090,246 RGD:6480464
G Icam1 intercellular adhesion molecule 1 JBrowse link 8 22,035,287 22,047,049 RGD:6480464
G Sele selectin E JBrowse link 13 82,355,234 82,365,323 RGD:6480464
G Tlr2 toll-like receptor 2 JBrowse link 2 182,840,171 182,846,061 RGD:6480464
G Tlr4 toll-like receptor 4 JBrowse link 5 82,587,424 82,601,056 RGD:6480464
G Vcam1 vascular cell adhesion molecule 1 JBrowse link 2 219,071,193 219,090,931 RGD:6480464

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19734
    role 19680
      biological role 19678
        biochemical role 19177
          metabolite 19147
            eukaryotic metabolite 18768
              plant metabolite 17113
                sophorose 6
                  sophoroside + 6
Path 2
Term Annotations click to browse term
  CHEBI ontology 19734
    subatomic particle 19730
      composite particle 19730
        hadron 19730
          baryon 19730
            nucleon 19730
              atomic nucleus 19730
                atom 19730
                  main group element atom 19614
                    p-block element atom 19614
                      carbon group element atom 19506
                        carbon atom 19500
                          organic molecular entity 19500
                            heteroorganic entity 19066
                              organochalcogen compound 18783
                                organooxygen compound 18696
                                  carbohydrates and carbohydrate derivatives 12112
                                    carbohydrate 12112
                                      oligosaccharide 437
                                        disaccharide 365
                                          glycosylglucose 50
                                            sophorose 6
                                              sophoroside + 6
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.