Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
  Home     Edit Strains     Edit Gene List     Sequence Annotation
 Assembly Rnor_5.0
   

Chromosome Start Position Stop Position
Region Size: 133,687 (bp)   Positions: 263
Conservation 
Genes ( + ) 
Genes ( - ) 
Rnor 5.0  
SS/JrHsdMcwi (MCW) 
.118
.001
.001
.378
.009
.341
.778
.001
.035
.706
.002
.029
.029
.281
.308
.048
.016
--
--
.21
.149
.0
.053
.001
.0
.036
--
--
--
.012
.019
.002
.011
.078
.451
.399
.324
.148
.014
.164
.003
.401
.0
.006
.021
.012
.002
.006
.016
.006
.002
.027
.712
.023
.0
.227
.006
.002
.202
.031
--
.903
.002
.001
.0
.1
.058
.217
.001
.397
--
--
.001
.0
.186
.0
.108
.013
.012
.026
.432
.0
.0
.0
.159
.001
.0
.062
.001
.536
.537
--
--
--
--
--
--
.013
.165
.001
.156
.002
.0
.003
.0
.015
.014
.147
.007
.004
.004
.021
.001
.001
.748
.001
.058
.964
.003
.016
.061
.001
.014
.001
.0
.005
.009
.087
.021
.001
.0
.001
--
--
.003
.028
.0
.019
.036
.0
.196
.003
.002
.0
.092
.0
.001
.004
.002
.018
.029
.013
.001
.001
.006
.186
.083
.211
.322
.008
.0
.003
.001
.003
.001
.001
.992
1.0
.048
.129
.002
--
.001
.149
.001
.005
.005
.004
.0
.039
.008
.0
.019
.131
.001
.019
.0
.002
.014
1.0
.047
.0
.0
.001
.0
.0
.001
.003
.009
.002
.027
.024
.065
.002
.027
.0
.01
.0
.578
.001
.068
.004
.001
.002
.002
.002
.084
.012
.018
.175
.008
.003
.006
--
--
.001
.011
.837
.015
.002
.001
.021
.989
.004
.034
.004
.001
.046
.001
.002
.0
.386
.007
.001
.002
.0
.141
.009
.287
.02
.001
.002
.001
.217
.153
.168
.074
.017
.0
.0
.001
.044
.263
Usp24
Usp24
Usp24
Usp24
Usp24
Usp24
Usp24
Usp24
Usp24
Usp24
Usp24
Usp24
Usp24
Usp24
Usp24
Usp24
Usp24
Usp24
Usp24
Usp24
Usp24
Usp24
Usp24
Usp24
Usp24
Usp24
Usp24
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
G
C
G
G
G
C
C
A
T
8
C
20
6
C
T
A
2
G
G
C
2
4
T
C
A
A
G
4
C
G
G
A
G
G
C
T
C
G
C
A
G
A
T
T
T
G
G
A
G
T
G
G
A
T
A
C
5
7
C
G
T
T
4
T
C
A
G
G
C
A
T
8
A
T
T
A
A
A
G
A
T
A
C
A
A
C
C
G
A
G
T
T
2
G
T
G
C
G
G
A
A
A
G
A
9
A
T
T
G
G
A
G
G
G
A
A
T
G
G
T
A
G
T
T
G
G
G
C
2
T
T
T
T
A
A
C
A
T
C
A
A
C
A
A
A
C
A
G
T
G
2
A
C
T
A
6
2
20
2
T
A
C
2
A
G
C
T
C
C
A
G
A
C
14
C
G
A
T
T
T
G
C
A
C
G
G
A
G
G
C
G
G
T
G
A
A
G
T
G
T
C
T
C
G
7
G
A
T
T
T
A
G
T
G
T
A
A
T
A
G
C
A
C
C
T
G
16
C
A
T
G
G
T
T
A
A
A
A
T
A
A
C
T
G
A
G
C
3
4
A
C
A
G
A
G
G
T
A
C
G
T
C
C
  129,744,285
  129,744,345
  129,744,347
  129,744,373
  129,744,379
  129,744,383
  129,744,392
  129,744,847
  129,747,670
  129,747,869
  129,749,322
  129,750,066
  129,750,067
  129,750,183
  129,750,187
  129,758,692
  129,758,738
  129,759,933
  129,760,158
  129,761,107
  129,761,674
  129,761,712
  129,763,487
  129,765,589
  129,765,706
  129,766,284
  129,767,141
  129,767,732
  129,767,840
  129,768,247
  129,768,655
  129,768,860
  129,769,438
  129,770,191
  129,770,363
  129,770,371
  129,770,385
  129,770,822
  129,770,835
  129,771,540
  129,772,303
  129,772,581
  129,772,965
  129,773,257
  129,773,721
  129,774,415
  129,775,222
  129,775,794
  129,776,061
  129,776,145
  129,776,148
  129,776,716
  129,777,484
  129,777,692
  129,777,803
  129,778,570
  129,778,681
  129,778,781
  129,779,025
  129,779,036
  129,779,723
  129,779,878
  129,780,536
  129,780,616
  129,780,625
  129,782,022
  129,784,175
  129,784,620
  129,784,915
  129,785,424
  129,785,637
  129,785,647
  129,786,433
  129,786,626
  129,787,224
  129,788,018
  129,789,084
  129,789,860
  129,790,092
  129,791,710
  129,792,111
  129,792,653
  129,792,925
  129,793,194
  129,793,370
  129,793,838
  129,794,429
  129,795,009
  129,795,114
  129,796,169
  129,796,176
  129,796,489
  129,796,603
  129,796,735
  129,796,741
  129,796,844
  129,796,925
  129,797,658
  129,797,867
  129,797,969
  129,798,370
  129,798,935
  129,800,217
  129,800,308
  129,800,413
  129,800,730
  129,801,184
  129,801,234
  129,801,241
  129,801,254
  129,802,056
  129,802,226
  129,803,616
  129,803,918
  129,804,657
  129,805,663
  129,806,603
  129,807,033
  129,807,873
  129,808,283
  129,808,344
  129,808,691
  129,809,666
  129,810,528
  129,811,652
  129,811,839
  129,811,845
  129,811,889
  129,812,139
  129,812,320
  129,812,708
  129,812,992
  129,813,833
  129,814,099
  129,814,439
  129,815,212
  129,815,841
  129,818,186
  129,818,190
  129,818,296
  129,819,079
  129,819,197
  129,820,069
  129,820,375
  129,820,411
  129,820,793
  129,822,493
  129,824,199
  129,824,203
  129,824,421
  129,824,428
  129,824,441
  129,824,670
  129,824,959
  129,825,494
  129,826,276
  129,826,280
  129,826,302
  129,826,320
  129,826,687
  129,826,694
  129,828,646
  129,828,651
  129,830,953
  129,831,490
  129,831,496
  129,832,494
  129,832,506
  129,832,832
  129,832,896
  129,833,597
  129,834,338
  129,834,463
  129,835,642
  129,836,211
  129,836,523
  129,837,018
  129,838,810
  129,839,236
  129,840,511
  129,840,515
  129,840,684
  129,840,886
  129,841,750
  129,842,666
  129,842,948
  129,843,050
  129,843,919
  129,844,819
  129,845,013
  129,845,277
  129,845,363
  129,845,409
  129,845,413
  129,845,431
  129,845,638
  129,845,703
  129,845,763
  129,846,066
  129,846,083
  129,846,096
  129,846,119
  129,846,158
  129,847,196
  129,847,527
  129,847,548
  129,847,572
  129,847,593
  129,848,217
  129,848,271
  129,848,322
  129,848,370
  129,849,013
  129,849,130
  129,849,134
  129,849,901
  129,851,476
  129,851,727
  129,852,640
  129,853,440
  129,853,471
  129,853,654
  129,853,734
  129,854,562
  129,854,605
  129,855,345
  129,855,421
  129,855,652
  129,855,697
  129,855,928
  129,857,310
  129,857,973
  129,858,218
  129,858,365
  129,858,497
  129,858,505
  129,858,795
  129,858,949
  129,859,190
  129,859,846
  129,859,934
  129,861,076
  129,862,612
  129,863,041
  129,863,270
  129,864,175
  129,865,933
  129,866,285
  129,866,421
  129,866,633
  129,868,060
  129,868,125
  129,869,165
  129,869,470
  129,871,940
  129,872,339
  129,872,683
  129,872,783
  129,873,041
  129,873,835
  129,874,888
  129,875,273
  129,876,499
A
A
-
C
C
2
2
G
G
-
A
-
-
T
A
C
2/-
2
A
T
2/-
-
A
G
T
G
A
-
A
A
A
G
A
A
2
TC/3
C/T
A
T
G
C
-
C
C
C
T
C
G
A
G
A
A
G
C
G
T
-
-
2
A
C
C
-
C
T
-
T
2
T
G
A
-
T
C
3
G
G
G
A
G
2
G
T
16
G
-
G
T
G
A
C
T/C
-
A
C
A
T
T
A
5
G
T
A
G
-
2
7
G
A
A
G
A
A
A
5
G
C
A
A
-
-
A
G
G
A
A
A
T
-
G
C
C
-
G
G
G
-
A
T
T
T
T
-
T
-
6
G
A
G
A
-
4
T
C
G
-
-
20/-
-
C
C
G
-
T
A
T
C
T
T
-
A
2
2
14/-
3
A
G
G
C
G
A
T
C
G
A
2
G
A
A
T
5
A
3
A
G
G
A
A
3
-
3
C
T
C
-
T
G
G
-
C
2
A
3
-
G
2
G
2
T
T
T
G
11
T
T/C
A
-
3
2
G
A
C
C
C
G
T
C
G
C
-
G
3/CT
A
A
G
A
5
-
-
G
T
T
T
G
A
A
C
G
-
A
C
T
T