Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
  Home     Edit Strains     Edit Gene List     Sequence Annotation
 Assembly Rnor_5.0
   

Chromosome Start Position Stop Position
Region Size: 88,435 (bp)   Positions: 258
Conservation 
Genes ( + ) 
Genes ( - ) 
Rnor 5.0  
SBN/Ygl (KNAW) 
.844
.985
.061
.0
--
--
--
--
--
--
--
--
--
.909
.27
.373
.0
.362
.009
.047
.015
.039
.0
.031
.02
.352
.004
.003
.094
.004
.11
.012
.061
--
--
.046
.116
.003
.001
.003
.187
.472
.589
.225
.216
.196
.003
.191
.004
.018
.0
.007
.059
.003
.032
.337
.342
.143
.134
.09
.097
.427
.004
.009
.001
.997
.045
.076
.004
.002
.023
.041
.05
.002
--
--
--
--
--
.089
.01
.001
.273
.128
.057
.044
.021
.001
.011
.002
--
.289
.454
.002
.001
.621
.002
.39
1.0
.268
--
--
--
--
--
.178
.752
.0
.0
.012
--
--
--
--
.001
.001
.001
.015
.048
.026
.018
.001
--
--
.001
.001
.005
.007
.878
.0
1.0
.029
.062
.014
.007
.001
.001
.0
--
--
--
--
--
.384
--
.651
.003
.002
.019
.04
.007
.14
.054
.004
.033
.001
.905
1.0
.002
.124
.034
.099
.04
.156
.058
.024
--
--
--
--
--
--
--
--
--
--
.076
.335
.004
.233
.003
.006
.002
.007
.062
.001
.045
.002
--
.906
--
--
--
.03
.004
.997
--
.039
.013
.066
.002
.456
.38
.098
.533
--
--
.026
.096
.44
.103
.022
--
.05
.001
.228
.35
.008
.109
.401
--
--
.004
.144
.038
.54
.04
.138
.113
.57
.458
.641
--
--
.012
.005
.027
.007
.26
.64
.571
.23
.04
.412
.528
--
--
--
.02
.028
.397
.158
.09
.303
.067
.001
.011
.0
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
Trpm7
Trpm7
Trpm7
Trpm7
Trpm7
Trpm7
Trpm7
Trpm7
Trpm7
Trpm7
Trpm7
Trpm7
Trpm7
Trpm7
Trpm7
Trpm7
Trpm7
Trpm7
Trpm7
Trpm7
Trpm7
Trpm7
Trpm7
Trpm7
Trpm7
Trpm7
T
G
A
A
C
T
T
G
A
C
A
A
T
A
A
C
T
C
A
G
A
C
G
T
G
G
C
5
G
G
T
C
C
A
C
G
C
G
T
G
T
G
C
C
T
3
A
A
T
T
2
C
C
T
T
23
A
A
G
G
C
A
G
G
C
C
C
A
A
A
A
C
A
A
A
A
T
T
G
T
G
A
C
C
G
4
C
C
G
A
G
6
T
T
T
T
A
C
A
G
2
T
G
C
G
G
T
A
G
A
C
G
T
G
G
C
G
C
C
T
G
C
T
T
T
T
A
G
126
T
T
G
C
3
A
T
C
G
22
10
C
A
C
C
T
A
A
A
G
T
C
A
A
G
T
11
A
A
A
G
C
G
12
C
G
T
T
C
C
G
A
A
12
T
G
A
T
A
T
C
4
A
G
T
C
T
C
C
T
C
A
A
G
T
G
A
A
A
T
A
A
G
G
C
G
20
14
8
T
G
25
6
T
T
G
C
8
A
A
G
C
G
T
T
C
G
5
C
T
A
G
T
C
T
T
A
C
T
G
A
C
4
T
G
A
6
G
G
G
A
C
T
C
G
4
A
A
C
  125,783,819
  125,784,342
  125,784,521
  125,784,586
  125,784,945
  125,785,075
  125,785,101
  125,785,256
  125,785,280
  125,785,737
  125,785,854
  125,785,899
  125,786,175
  125,786,393
  125,786,449
  125,786,604
  125,787,085
  125,787,305
  125,787,681
  125,787,796
  125,789,221
  125,792,957
  125,793,863
  125,793,893
  125,794,303
  125,794,895
  125,795,473
  125,795,502
  125,796,296
  125,796,302
  125,796,403
  125,796,491
  125,796,542
  125,796,748
  125,796,806
  125,797,071
  125,797,190
  125,797,263
  125,797,288
  125,797,362
  125,798,067
  125,798,136
  125,798,151
  125,798,332
  125,798,375
  125,798,384
  125,798,512
  125,798,555
  125,798,955
  125,799,060
  125,799,688
  125,799,828
  125,799,861
  125,800,041
  125,800,369
  125,800,506
  125,800,532
  125,800,593
  125,800,594
  125,800,605
  125,800,629
  125,800,842
  125,801,158
  125,801,160
  125,802,019
  125,802,461
  125,803,022
  125,803,028
  125,803,082
  125,803,355
  125,804,605
  125,804,609
  125,804,830
  125,804,845
  125,805,055
  125,805,056
  125,805,091
  125,805,096
  125,805,132
  125,805,320
  125,805,813
  125,805,879
  125,806,756
  125,806,801
  125,806,826
  125,806,827
  125,806,893
  125,807,179
  125,807,769
  125,808,036
  125,808,133
  125,808,173
  125,808,313
  125,808,952
  125,808,978
  125,809,356
  125,809,584
  125,809,654
  125,811,009
  125,811,123
  125,811,537
  125,811,549
  125,811,704
  125,811,731
  125,811,927
  125,812,592
  125,813,040
  125,813,426
  125,813,537
  125,813,772
  125,813,788
  125,814,376
  125,814,379
  125,814,574
  125,814,894
  125,814,896
  125,814,903
  125,814,915
  125,814,924
  125,814,927
  125,814,928
  125,814,935
  125,815,024
  125,815,047
  125,815,486
  125,815,487
  125,815,534
  125,816,100
  125,816,462
  125,816,764
  125,816,992
  125,817,462
  125,817,501
  125,817,655
  125,818,283
  125,818,437
  125,818,689
  125,819,483
  125,820,461
  125,820,473
  125,820,897
  125,820,903
  125,820,924
  125,820,971
  125,822,493
  125,822,652
  125,823,835
  125,823,859
  125,824,222
  125,824,224
  125,824,698
  125,824,766
  125,825,041
  125,825,217
  125,825,280
  125,825,533
  125,826,081
  125,827,668
  125,827,883
  125,827,919
  125,828,060
  125,828,362
  125,828,559
  125,828,698
  125,828,758
  125,829,254
  125,829,743
  125,829,832
  125,829,836
  125,829,914
  125,830,224
  125,830,331
  125,830,344
  125,830,444
  125,830,467
  125,831,416
  125,831,740
  125,831,858
  125,832,009
  125,833,789
  125,835,430
  125,835,938
  125,835,948
  125,836,405
  125,838,253
  125,838,422
  125,839,757
  125,841,081
  125,841,766
  125,845,032
  125,846,583
  125,846,628
  125,846,785
  125,847,331
  125,847,392
  125,847,954
  125,848,725
  125,849,369
  125,849,691
  125,850,054
  125,850,194
  125,850,279
  125,850,284
  125,851,387
  125,851,463
  125,852,067
  125,852,143
  125,852,353
  125,852,777
  125,852,979
  125,853,257
  125,853,454
  125,853,467
  125,853,803
  125,854,652
  125,855,086
  125,855,098
  125,856,387
  125,856,663
  125,856,817
  125,857,189
  125,857,209
  125,857,239
  125,857,351
  125,857,677
  125,857,991
  125,858,243
  125,858,264
  125,859,088
  125,859,135
  125,859,393
  125,859,414
  125,860,639
  125,861,355
  125,862,577
  125,862,632
  125,863,217
  125,863,836
  125,864,121
  125,864,342
  125,864,351
  125,864,796
  125,865,179
  125,866,462
  125,866,562
  125,866,888
  125,867,060
  125,867,090
  125,867,423
  125,868,048
  125,868,297
  125,868,510
  125,868,608
  125,869,533
  125,869,614
  125,869,814
  125,871,078
  125,871,194
C
A
G
G
T
2
3
G/2
-
A
7
-
3/TA
-
5
T
C
T
T
A
T
T
A
C
2
G/-
T
-
T
T
6
T
2
G
2
A
T
A
-
T
C
A
5
T
C
-
G
G
C
T/-
-
A
T
C
C
-
C
T
A
T
T
G
T
T
T
T
G
3
2
T
G
T
G
G
T
T
-
A
A
C
T
G
T
T
G/3
-
G
T
A
A/2
A
-
C
C
G
2
T
T
G
3
-
C
A
3
A
A
C
G
C
G
T
T
T/A
A
T
A
T
2
A
2
C
2
2
-
A
A
G
T
-
C
C
A
T
-
C
G
T
A
22/-
10/-
C/10
A/27
T
3
-
2
-
-
A
2
T
2
-
A
C
-
G
G
C
A
C/2
T
-
-
31
-
2
C/-
C/-
G/A
C
G
-
C
C
A/-
C
-
2
T
-
T
A
C
T
C
G
T
-
T
G
G
A
C
A
T
-
-
C
A/G
-
G/3
G/T
A
A
-
14/-
-
7
7
-
-
4
-
A
A
-
G
-
2
T
A
-
C
3/9
A
-
2
G
-
A
C
T
G
2
G
A
C
C
G
2
-
5
A
G
-
G/-
A
A
G
T
T/2
17
T
-
A/5
G
T