Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
  Home     Edit Strains     Edit Gene List     Sequence Annotation
 Assembly Rnor_5.0
   

Chromosome Start Position Stop Position
Region Size: 84,130 (bp)   Positions: 120
Conservation 
Genes ( + ) 
Genes ( - ) 
Rnor 5.0  
F344/NRrrc (SOLiD) (KNAW) 
.673
.0
--
.008
.008
.062
.001
.058
.17
.001
.184
.263
.025
.003
.004
.001
.071
.013
.016
.301
.005
.0
.02
.047
.001
.129
--
--
--
--
.086
.001
.811
.004
.003
--
--
--
--
.085
.408
.028
.066
--
--
.001
.0
--
.047
.721
.018
.001
--
.098
.017
.123
.001
.011
.168
.173
.154
.15
.059
.043
.012
--
.028
.005
.016
.021
.059
.004
.0
.001
.001
.002
.001
.008
.1
.001
.004
.042
.001
.002
.001
.013
.066
.009
.188
.358
.2
.047
.025
.331
.26
.283
.283
.187
.014
.208
.0
.058
.037
.069
.001
.0
.0
.0
.001
.064
.366
.045
.0
.0
.008
.725
.994
.058
.998
1.0
Tmeff1
Tmeff1
Tmeff1
Tmeff1
Tmeff1
Tmeff1
Tmeff1
Tmeff1
Tmeff1
Tmeff1
Tmeff1
Tmeff1
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
19
A
G
T
G
C
G
A
T
A
A
11
T
A
C
A
75
C
A
A
G
A
G
T
A
C
3
T
A
A
A
A
T
C
A
A
A
A
G
G
C
T
A
C
A
C
A
2
C
G
A
A
G
A
6
A
T
T
C
C
T
C
C
C
C
C
4
T
T
A
A
C
T
T
C
G
T
C
T
T
T
A
A
T
G
54
T
C
C
A
C
C
A
A
A
A
A
G
G
C
T
G
G
T
C
A
G
G
T
G
T
G
T
C
3
C
A
2
G
A
  68,843,877
  68,845,054
  68,847,346
  68,847,651
  68,848,882
  68,850,601
  68,850,798
  68,850,812
  68,852,404
  68,853,182
  68,855,000
  68,855,529
  68,856,150
  68,857,186
  68,860,823
  68,860,880
  68,861,545
  68,862,715
  68,863,009
  68,863,066
  68,864,316
  68,867,052
  68,869,317
  68,871,073
  68,871,694
  68,874,847
  68,876,954
  68,877,753
  68,877,806
  68,877,834
  68,878,152
  68,878,460
  68,878,881
  68,880,062
  68,882,199
  68,882,985
  68,883,373
  68,883,617
  68,884,174
  68,886,229
  68,886,515
  68,889,719
  68,889,968
  68,891,493
  68,892,017
  68,892,302
  68,892,447
  68,893,374
  68,894,157
  68,895,035
  68,896,932
  68,898,210
  68,898,879
  68,899,057
  68,901,705
  68,903,453
  68,904,585
  68,904,613
  68,905,239
  68,905,245
  68,905,314
  68,905,343
  68,905,354
  68,905,362
  68,905,414
  68,905,510
  68,905,977
  68,906,122
  68,906,268
  68,906,365
  68,906,427
  68,906,532
  68,906,572
  68,907,451
  68,907,736
  68,908,181
  68,909,647
  68,909,650
  68,910,497
  68,914,387
  68,914,593
  68,914,960
  68,915,063
  68,915,065
  68,915,067
  68,915,376
  68,916,236
  68,916,533
  68,916,664
  68,916,686
  68,916,733
  68,917,361
  68,917,849
  68,918,325
  68,918,978
  68,918,981
  68,919,014
  68,919,212
  68,919,700
  68,919,786
  68,919,938
  68,920,072
  68,920,075
  68,920,227
  68,920,445
  68,920,556
  68,920,588
  68,920,591
  68,920,599
  68,920,907
  68,921,111
  68,921,310
  68,921,851
  68,922,006
  68,922,033
  68,923,289
  68,924,072
  68,925,148
  68,926,036
  68,926,344
19/-
2
G/A
C
A
C/3
A
T
G
C
G
-
C
G
A
A/-
75/-
T
2
-
G/2
C
A
C
T
28
-
T/A
G
G
C
A/T
T/2
3
T
G
-
A/G
A
A
C/-
7
A/G
-
G
T
G
-
T
T
3
G
C
G
-
G
C
C
2
T
G
A
T
T
T
G
-
T/C
C
-
G
G
G
A
T
A
C
G
C
A
C
C
-
C
A
54/-
C
T
T
G
11
G
G
A/T
G
G
G
A
A
T
C
A
C
C
T
G
A
A
C
A
C
A
C
T
-
2
G
2/-
A
T