Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
  Home     Edit Strains     Edit Gene List     Sequence Annotation
 Assembly Rnor_5.0
   

Chromosome Start Position Stop Position
Region Size: 177,702 (bp)   Positions: 351
Conservation 
Genes ( + ) 
Genes ( - ) 
Rnor 5.0  
ACI/EurMcwi (MCW) 
.001
.559
.045
.607
.994
.0
.022
.001
.143
.001
.001
.001
.007
.252
.004
.011
.004
.003
.003
.124
.013
.109
.161
.3
.003
--
.294
.485
.524
.184
.043
.005
.001
.006
.056
.0
.0
.007
.038
.52
.03
.048
.054
.079
.023
.008
.0
.0
--
--
--
--
.203
--
--
--
--
--
--
--
.006
.01
.054
.044
.009
--
.738
.059
.042
.004
.002
.005
.017
.935
.004
.44
.035
.019
.99
.054
.206
.01
.004
.004
.004
--
.066
--
.003
.063
.04
.142
.033
.014
.0
.898
.023
.02
.001
.0
.0
.02
.039
--
.199
.001
.009
.051
.0
.043
.036
.121
.011
.0
.371
.0
.0
.03
.145
.0
.0
.003
.007
.002
.003
.019
.075
.047
.007
.0
.003
.0
.042
.001
.0
.099
.115
.016
.037
.0
.772
.002
--
--
--
.135
.01
.001
.002
.015
.001
.721
.003
.134
.0
.012
.021
.008
.138
.056
.003
--
--
--
.166
.182
.029
.0
.133
.028
.001
.019
.0
.018
.061
.19
.261
.368
.439
.177
.023
.092
.728
.154
.006
.039
.001
.007
.011
.005
.031
.039
.003
.011
.679
.023
.014
.005
.219
.708
.012
.237
.001
.0
.004
.017
.023
.002
--
--
.0
.005
.039
.03
.027
1.0
1.0
.996
1.0
.002
.001
--
--
--
--
--
--
--
--
.003
.033
.103
.091
.115
.0
.027
.009
.987
.134
.064
.074
.018
.001
.0
.044
.0
.031
.005
.088
.042
.0
.004
.0
--
.063
.258
.059
.011
.006
--
.001
.0
.016
.018
.992
.806
.999
.036
.001
.897
.011
.971
.01
.001
.056
.076
.001
--
--
--
--
--
.003
.004
.093
.0
.001
.002
.09
.001
.001
.05
.016
.325
.376
.456
.447
.457
.12
.077
.021
--
--
.117
.207
.314
--
.001
.007
.017
.007
.005
--
.011
.057
.003
.0
.142
.127
--
--
--
.001
.006
.846
.01
.005
--
.009
.065
.036
.008
.004
--
.009
.086
.008
.004
--
--
--
.23
.129
--
.118
.008
--
.09
.039
--
--
Slc44a1
Slc44a1
Slc44a1
Slc44a1
Slc44a1
Slc44a1
Slc44a1
Slc44a1
Slc44a1
Slc44a1
Slc44a1
Slc44a1
Slc44a1
Slc44a1
Slc44a1
Slc44a1
Slc44a1
Slc44a1
Slc44a1
Slc44a1
Slc44a1
Slc44a1
Slc44a1
Slc44a1
Slc44a1
Slc44a1
Slc44a1
Slc44a1
Slc44a1
Slc44a1
Slc44a1
Slc44a1
Slc44a1
Slc44a1
Slc44a1
Slc44a1
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
LOC102551474
LOC102551474
LOC102551474
LOC102551474
LOC102551474
LOC102551474
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
C
T
A
G
G
G
A
G
A
A
G
T
C
G
G
G
T
4
C
A
A
G
T
G
A
A
G
A
A
T
T
T
T
C
A
C
T
T
A
T
4
G
G
G
G
2
3
A
T
A
T
A
A
A
G
C
A
T
C
T
T
C
G
C
C
T
T
G
G
T
T
T
C
A
3
T
G
A
G
G
T
G
T
4
2
A
A
A
A
G
A
T
A
T
T
G
A
G
G
A
C
C
A
8
8
C
A
C
A
A
T
12
A
C
C
A
C
T
C
A
G
4
A
A
G
A
T
G
C
T
A
G
T
G
G
C
A
T
6
T
C
G
T
T
A
G
3
T
T
A
4
G
T
C
T
8
T
A
G
A
G
A
A
C
T
C
T
G
G
C
A
A
G
T
A
C
C
G
G
T
G
T
A
C
A
28
T
C
C
C
4
A
G
A
C
C
G
G
A
A
T
C
G
A
C
G
A
A
3
4
G
A
G
6
5
T
G
A
A
T
A
C
2
C
C
T
T
T
4
C
G
C
T
C
T
T
C
G
A
T
10
C
G
G
G
A
T
G
C
2
G
A
T
G
A
A
G
T
A
C
C
A
G
T
2
C
C
T
C
G
C
G
G
T
C
T
A
G
C
2
A
G
T
T
C
T
T
T
G
2
C
A
G
G
C
C
G
T
C
G
G
C
2
4
2
G
T
T
T
G
G
T
T
A
A
C
A
C
C
C
2
A
A
T
A
G
A
G
C
A
T
T
A
A
C
C
G
G
T
G
4
C
C
T
T
T
T
4
T
A
A
  74,406,836
  74,407,049
  74,407,076
  74,408,234
  74,408,264
  74,409,482
  74,409,672
  74,410,510
  74,410,989
  74,410,992
  74,411,323
  74,411,993
  74,412,492
  74,412,812
  74,413,522
  74,413,589
  74,414,157
  74,414,322
  74,415,633
  74,416,628
  74,417,449
  74,417,475
  74,417,478
  74,417,798
  74,417,875
  74,418,507
  74,419,428
  74,419,475
  74,419,476
  74,419,723
  74,419,847
  74,420,006
  74,422,043
  74,422,784
  74,423,088
  74,423,761
  74,424,835
  74,425,016
  74,427,113
  74,428,685
  74,429,201
  74,429,230
  74,429,234
  74,429,238
  74,431,693
  74,432,312
  74,432,316
  74,432,317
  74,437,023
  74,437,144
  74,437,247
  74,437,257
  74,437,415
  74,437,551
  74,437,741
  74,437,762
  74,437,766
  74,437,799
  74,437,807
  74,437,813
  74,438,175
  74,438,365
  74,438,532
  74,438,902
  74,438,926
  74,439,067
  74,440,830
  74,441,492
  74,441,494
  74,441,543
  74,441,936
  74,442,345
  74,442,941
  74,444,081
  74,444,460
  74,445,121
  74,446,526
  74,446,619
  74,448,856
  74,449,138
  74,449,152
  74,450,697
  74,452,892
  74,453,380
  74,453,382
  74,454,446
  74,455,132
  74,455,548
  74,457,334
  74,460,811
  74,462,236
  74,462,566
  74,463,408
  74,463,414
  74,466,859
  74,467,897
  74,467,933
  74,467,934
  74,467,941
  74,471,112
  74,471,194
  74,471,724
  74,472,010
  74,472,470
  74,472,928
  74,472,950
  74,473,162
  74,473,733
  74,478,375
  74,478,652
  74,479,148
  74,479,159
  74,479,359
  74,479,760
  74,480,629
  74,481,014
  74,481,614
  74,481,871
  74,481,878
  74,482,040
  74,482,179
  74,482,187
  74,482,220
  74,482,408
  74,482,414
  74,482,417
  74,482,501
  74,482,725
  74,483,496
  74,483,736
  74,484,121
  74,484,671
  74,484,676
  74,487,061
  74,487,616
  74,488,219
  74,488,415
  74,489,018
  74,489,613
  74,490,134
  74,490,799
  74,491,062
  74,491,450
  74,491,462
  74,491,499
  74,491,714
  74,491,768
  74,492,031
  74,492,716
  74,492,806
  74,492,984
  74,493,279
  74,493,525
  74,493,629
  74,493,702
  74,493,738
  74,494,086
  74,494,114
  74,494,378
  74,494,543
  74,494,642
  74,494,885
  74,495,034
  74,495,089
  74,495,205
  74,495,238
  74,495,946
  74,497,352
  74,498,575
  74,499,222
  74,499,822
  74,499,990
  74,500,624
  74,500,636
  74,500,939
  74,501,077
  74,501,445
  74,501,565
  74,501,590
  74,501,625
  74,501,892
  74,501,911
  74,501,976
  74,501,989
  74,502,103
  74,502,290
  74,502,419
  74,502,489
  74,502,562
  74,502,593
  74,502,600
  74,502,610
  74,502,623
  74,502,827
  74,502,892
  74,502,959
  74,503,297
  74,503,492
  74,504,050
  74,505,297
  74,506,094
  74,506,848
  74,509,163
  74,509,401
  74,509,816
  74,509,995
  74,510,398
  74,510,567
  74,511,004
  74,511,036
  74,511,784
  74,512,284
  74,512,835
  74,512,842
  74,512,843
  74,512,947
  74,512,958
  74,512,964
  74,512,987
  74,513,209
  74,513,219
  74,513,572
  74,513,937
  74,513,950
  74,514,019
  74,514,046
  74,514,070
  74,514,073
  74,514,149
  74,515,065
  74,515,148
  74,515,502
  74,515,526
  74,516,550
  74,516,716
  74,517,107
  74,517,770
  74,518,025
  74,518,731
  74,519,073
  74,519,170
  74,519,279
  74,519,927
  74,520,128
  74,520,400
  74,520,562
  74,521,317
  74,521,466
  74,521,599
  74,522,195
  74,523,058
  74,523,163
  74,523,382
  74,524,796
  74,525,243
  74,527,116
  74,527,159
  74,527,500
  74,529,250
  74,529,638
  74,529,658
  74,529,889
  74,530,049
  74,530,220
  74,532,067
  74,532,429
  74,532,854
  74,533,275
  74,533,568
  74,534,157
  74,534,299
  74,535,324
  74,535,582
  74,538,573
  74,539,917
  74,540,592
  74,540,722
  74,542,498
  74,542,506
  74,542,538
  74,542,547
  74,542,555
  74,543,067
  74,545,064
  74,545,204
  74,545,560
  74,545,895
  74,545,901
  74,545,924
  74,546,288
  74,546,318
  74,546,402
  74,546,944
  74,547,092
  74,547,701
  74,547,713
  74,547,717
  74,547,719
  74,547,732
  74,547,738
  74,547,744
  74,548,856
  74,548,867
  74,549,670
  74,549,672
  74,550,147
  74,550,591
  74,550,952
  74,551,259
  74,553,742
  74,555,351
  74,555,443
  74,555,552
  74,556,469
  74,557,339
  74,557,650
  74,558,882
  74,559,582
  74,559,718
  74,560,277
  74,560,304
  74,560,453
  74,560,838
  74,561,381
  74,562,039
  74,562,241
  74,563,765
  74,564,638
  74,565,515
  74,565,578
  74,565,664
  74,565,673
  74,566,452
  74,567,429
  74,567,739
  74,568,160
  74,568,561
  74,570,097
  74,570,357
  74,574,185
  74,574,223
  74,574,369
  74,574,384
  74,574,571
  74,575,178
  74,575,442
  74,576,777
  74,578,848
  74,579,461
  74,579,599
  74,579,603
-
-
T
T
3
T
G
A
G
G
A
C
T
5
G/2
A
C
-
G
G
G
3
4
A
T
G
A
G
G
G
G
C
T/C
A
A/3
3/CT
-
C
C
A
-
G/A
A
A
G/A
-
-
-
T/G
A/G
T/C
A/G
AT/3
A/G
G/A
C/T
A/G
T/A
C/T
T/A
C
A
T
G
T
C
T/4
G/7
7
T/3
9/7
3/TG
2
G
-
3
3
T
T
3
T/C
A
A
-
2/-
C
G
G
G
-
G
C
4
T/2
C
2
A/2
G/-
2
T
-
CT/3
G
-
-
C/T
T
T
G
G
G
-
G
T
G
G
2
2
T
G
T
-
T
14
G/T
A/G
G
A
T
G
G
2
3
A
C
G
C
2
-
C
T
A
T/C
T/C
-
A
-
2
G
2
-
A
C
T
C
8/-
-
5
C
G
C
A/T
A/G
C/T
-
2
C
4/3
A
G
C
G
C
C
T
T
T
A
A
-
A
C
G
5
G
-
G
T
9
C/T
4/-
A/G
A
G
C/T
T
A
A
G
T
A
2
A
T
T
A
G
G
3/-
-
A
G
-
-
-
2
2
-
2
-
-
5
-
C/T
C/T
T/C
T/C
T/C
4/-
2
A
T
G
T
C
C
C/10
A
C
-
-
T
A
A
2
G
2
A
G
-
A
G
C
3
G
-
A
-
2
2
3
G
A
-
-
5
T
C
G
T
T
C
T
G
T
TA/A
C
G/A
C/T
2/-
A/G
G/A
C
G
T
A
A
A
A
2/-
C/T
9
A
2
-
T
T
-
G
A
-
3
2/-
4/-
-
T
2
C
C
A
A
C
C
G
G
T
C
G
T
A
-
G
-
G
G
G/C
G
2
T
-
C
C
G
G
T
T
A
A
C
G/3
4/-
2
2
2
C
C
G
4/-
C
A/G
G