Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
  Home     Edit Strains     Edit Gene List     Sequence Annotation
 Assembly Rnor_5.0
   

Chromosome Start Position Stop Position
Region Size: 145,454 (bp)   Positions: 354
Conservation 
Genes ( + ) 
Genes ( - ) 
Rnor 5.0  
MHS/Gib (KNAW) 
.002
.002
.008
.003
.004
.594
.001
.001
.001
.309
.002
.046
.116
.0
.0
.0
.025
.058
.006
.001
.116
.004
.006
.571
.562
.013
.005
.328
.008
.072
.003
.016
.01
.027
.004
.004
.062
.057
--
--
.502
--
.006
.015
.181
.001
.011
.044
.001
.001
--
--
.174
.004
--
--
--
--
--
.02
.017
.535
--
.006
.022
.33
.002
.688
.692
.15
.035
.096
--
.075
.058
.028
.072
.001
.0
.0
.0
.005
.006
.003
.003
.001
.004
.001
.007
.039
.013
.001
.139
.812
.029
.141
.047
.015
.001
.15
.021
.12
.011
.012
.004
.183
.001
.008
.056
.22
.052
.143
.119
.034
.019
.001
.065
.298
.259
.066
.001
.0
.003
.019
.709
.723
.726
.005
.036
.018
.004
.0
.417
.022
.157
.262
.002
.0
.001
.0
.003
.782
.001
.076
.001
.621
.054
.019
.002
.064
.0
.001
.004
.006
.253
.012
.001
.135
.104
.114
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
.0
.012
.012
.004
.068
.007
.021
.001
.0
.002
.004
.021
.001
.009
.002
.0
.056
.06
.088
.0
.003
.0
.002
.023
.017
.348
.002
.015
.013
.375
.003
.059
.0
.002
.022
.044
.075
.152
.012
.0
.002
.427
.98
.001
.024
--
--
--
--
--
--
--
--
.003
.002
.001
.002
.011
.016
.011
.001
.005
.014
.0
.011
.0
.99
.0
.003
.205
.001
.111
.003
.018
.0
.283
.015
.0
1.0
.993
.161
.386
.022
.048
.001
.001
.001
.012
.003
.003
.001
.28
.019
--
--
--
.028
.0
.111
.707
.107
.122
.405
.319
.366
.11
.006
.4
.578
.059
.074
.024
.125
.11
.022
.443
.006
--
--
--
--
--
--
--
--
--
--
--
--
--
.025
.023
.023
--
--
--
--
--
--
--
--
.008
.006
.012
.02
.009
.049
.008
.095
.0
.003
.02
.561
.001
.046
.005
.808
.001
.008
.001
.005
.004
Pde5a
Pde5a
Pde5a
Pde5a
Pde5a
Pde5a
Pde5a
Pde5a
Pde5a
Pde5a
Pde5a
Pde5a
Pde5a
Pde5a
Pde5a
Pde5a
Pde5a
Pde5a
Pde5a
Pde5a
Pde5a
Pde5a
Pde5a
Pde5a
Pde5a
Pde5a
Pde5a
Pde5a
Pde5a
Pde5a
Pde5a
Pde5a
Pde5a
Pde5a
Pde5a
Pde5a
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
G
C
C
G
A
T
C
T
G
G
A
A
G
A
T
T
G
2
T
4
G
T
A
2
A
T
A
T
G
A
T
G
A
G
T
T
C
C
2
20
A
C
G
G
T
C
T
A
G
A
G
T
A
T
A
T
A
A
T
C
C
A
A
C
G
A
T
2
T
G
A
C
G
A
T
C
T
A
A
C
A
G
T
T
T
A
C
C
G
T
T
T
C
T
G
C
G
T
C
C
T
T
A
T
C
T
T
A
G
T
A
A
G
A
T
G
C
G
G
T
G
2
G
C
T
C
A
A
A
T
C
G
A
T
A
T
C
A
G
A
T
C
T
T
T
T
C
A
C
T
3
C
A
A
C
C
2
A
T
2
A
A
C
G
C
G
G
A
C
G
2
3
2
A
T
C
G
T
A
C
2
G
T
T
T
G
G
A
G
G
T
A
C
A
T
T
T
T
3
G
A
G
A
C
A
G
G
A
G
G
A
G
4
T
C
G
A
A
T
C
G
A
T
C
T
G
G
C
C
G
G
T
G
4
T
C
T
T
C
T
C
C
T
T
T
T
T
A
A
A
A
A
G
G
2
C
T
T
A
T
T
A
G
G
A
A
T
A
A
C
C
G
T
A
A
T
A
A
G
C
C
A
T
C
G
A
A
A
G
A
C
A
G
T
T
T
G
22
4
T
C
T
T
T
G
C
T
T
G
G
G
T
T
C
C
T
T
C
C
C
A
C
2
A
T
C
G
T
A
A
C
T
A
A
A
10
C
T
5
A
C
C
A
C
G
C
A
G
A
G
C
A
C
T
  246,260,944
  246,260,979
  246,262,834
  246,262,864
  246,263,285
  246,263,397
  246,263,501
  246,264,138
  246,264,364
  246,264,620
  246,265,465
  246,265,847
  246,265,852
  246,266,282
  246,266,482
  246,266,655
  246,266,858
  246,266,890
  246,266,900
  246,267,017
  246,267,136
  246,267,408
  246,267,674
  246,268,634
  246,268,635
  246,270,157
  246,270,247
  246,278,469
  246,278,630
  246,279,169
  246,280,053
  246,281,063
  246,282,649
  246,282,769
  246,284,320
  246,284,775
  246,285,654
  246,285,975
  246,289,499
  246,291,136
  246,293,919
  246,294,608
  246,295,882
  246,296,594
  246,296,971
  246,297,240
  246,298,790
  246,298,904
  246,298,984
  246,299,066
  246,302,426
  246,302,449
  246,302,826
  246,304,600
  246,305,703
  246,305,712
  246,305,900
  246,305,905
  246,305,935
  246,309,527
  246,309,845
  246,312,361
  246,313,942
  246,314,358
  246,316,528
  246,317,331
  246,317,849
  246,318,239
  246,318,252
  246,319,981
  246,320,629
  246,320,678
  246,321,999
  246,324,424
  246,324,440
  246,324,531
  246,324,625
  246,324,828
  246,324,877
  246,324,972
  246,325,019
  246,325,215
  246,325,216
  246,325,257
  246,325,776
  246,325,799
  246,326,060
  246,326,067
  246,326,154
  246,326,326
  246,326,668
  246,326,830
  246,327,089
  246,328,000
  246,328,150
  246,328,417
  246,328,633
  246,328,701
  246,328,828
  246,329,133
  246,329,206
  246,329,388
  246,329,695
  246,329,697
  246,330,742
  246,331,058
  246,331,772
  246,331,777
  246,332,319
  246,332,380
  246,332,550
  246,332,846
  246,332,910
  246,334,331
  246,334,925
  246,335,400
  246,336,097
  246,336,141
  246,336,501
  246,336,766
  246,336,872
  246,337,409
  246,338,339
  246,339,443
  246,339,572
  246,339,575
  246,339,578
  246,340,121
  246,340,484
  246,340,838
  246,341,252
  246,341,605
  246,342,566
  246,343,113
  246,344,377
  246,344,544
  246,345,027
  246,345,139
  246,345,171
  246,345,468
  246,345,763
  246,345,958
  246,346,016
  246,346,286
  246,346,445
  246,346,512
  246,346,543
  246,346,595
  246,346,665
  246,346,833
  246,347,442
  246,348,190
  246,348,314
  246,348,805
  246,348,988
  246,349,905
  246,349,995
  246,350,970
  246,351,240
  246,351,244
  246,351,940
  246,351,946
  246,352,112
  246,352,125
  246,352,129
  246,352,250
  246,352,255
  246,352,290
  246,353,035
  246,353,147
  246,353,295
  246,353,452
  246,353,453
  246,353,975
  246,354,341
  246,354,403
  246,354,709
  246,355,155
  246,355,325
  246,355,339
  246,355,666
  246,355,669
  246,355,905
  246,355,987
  246,356,047
  246,356,262
  246,356,631
  246,356,712
  246,357,001
  246,357,154
  246,357,377
  246,357,770
  246,357,899
  246,357,989
  246,358,096
  246,358,109
  246,358,818
  246,359,022
  246,359,049
  246,359,108
  246,359,169
  246,359,175
  246,359,233
  246,359,372
  246,359,616
  246,359,753
  246,359,771
  246,359,954
  246,360,828
  246,360,831
  246,360,835
  246,361,288
  246,361,303
  246,361,521
  246,361,679
  246,361,711
  246,361,720
  246,361,854
  246,362,110
  246,362,527
  246,362,594
  246,362,665
  246,362,723
  246,363,007
  246,363,206
  246,363,554
  246,363,753
  246,363,784
  246,364,123
  246,364,182
  246,364,248
  246,365,256
  246,366,016
  246,366,262
  246,366,349
  246,366,565
  246,366,608
  246,367,068
  246,367,083
  246,367,095
  246,367,122
  246,367,126
  246,367,140
  246,367,196
  246,367,199
  246,367,259
  246,367,399
  246,367,403
  246,367,811
  246,367,958
  246,368,110
  246,368,144
  246,368,181
  246,368,188
  246,368,219
  246,368,349
  246,368,565
  246,369,122
  246,369,330
  246,369,725
  246,369,849
  246,369,946
  246,372,367
  246,372,823
  246,372,881
  246,373,276
  246,373,358
  246,373,735
  246,374,026
  246,374,098
  246,374,278
  246,374,922
  246,375,055
  246,375,103
  246,375,169
  246,375,198
  246,375,515
  246,376,531
  246,376,542
  246,376,562
  246,376,573
  246,377,230
  246,377,532
  246,377,800
  246,378,316
  246,379,745
  246,379,910
  246,380,248
  246,380,651
  246,380,928
  246,383,902
  246,384,381
  246,384,948
  246,384,949
  246,385,185
  246,385,287
  246,385,448
  246,386,369
  246,386,451
  246,386,719
  246,387,772
  246,388,214
  246,388,249
  246,388,537
  246,388,691
  246,388,719
  246,389,270
  246,389,327
  246,389,478
  246,390,557
  246,390,750
  246,390,787
  246,390,887
  246,390,903
  246,390,999
  246,391,326
  246,391,640
  246,391,735
  246,392,228
  246,392,320
  246,392,515
  246,393,012
  246,393,685
  246,393,750
  246,394,424
  246,394,590
  246,394,700
  246,394,707
  246,395,578
  246,396,833
  246,398,034
  246,398,306
  246,398,608
  246,399,124
  246,399,562
  246,399,838
  246,400,241
  246,401,314
  246,401,503
  246,401,894
  246,402,158
  246,402,312
  246,402,356
  246,402,370
  246,402,770
  246,403,438
  246,403,463
  246,403,583
  246,403,966
  246,404,106
  246,405,255
  246,405,501
  246,405,709
  246,406,245
C
G
T
A
-
2
13
C
A
T
2
C
A
G
C
-
A
-
C
-
A
C
G
2/-
A/-
G
G
3
GT/3
-
G
2
G
C
G
C
C/3
T
-
-
T
2
4
A
C
G
-
17
A
G
5
3
G
C
T
C
G
G
-
T
T
A/3
2
T
5/7
-
C
-
A
2
G
T
A
T
A
3
9
G
G
T
15
T
C
C
T/C
3/4
T
15
A
C
5
A
T
C
A
T
A
A
T
T
A
C
G
C
T
C
C
2
T
T/-
T
2
A
G
C
C
T
A
A
C
A
-
2
T
55
29
30
G
G
-
T
A
2
A
-
C
T
T
G/2
G
C
G
A
C
G
G
8
G
T
C
-
A
T
G
5
T
-
G
G
-
T
T
T
A
A
T
T
G
T
T
-
3/-
2/-
G
G
T
A
C
G
T
-
3
C
C
G
21
A
G
-
-
A
G
A
-
C
C
C
C
-
T
G
A
G
T
A/11
T
C
C
A
A
G
A
-
C
T
A
G
G
A
A
C
G
2
T
C
A
2
A
T
T
T
C
2
-
A
G
C
4
4
29
7
10
C
C
C
C
A
G
-
G
-
20
G/3
G/2
--/-
T
C
C
G
C
C
G
A
A
G
2
C
A/17
G
G
T
C
C
G
G
C
G
G
C
T
T
G
C
T
A
G
G
2
A
G
G
G
T
C
A
A
A
22/-
-
C
T
4/3
A
C
10
T
C
G
A
-
C
C
C
T
G
G
C
G
T
T
G
A
-
G
C
C/15
A
C
2
G
T
A
C
G
G
-
2
A
-
C
-
T
G
T
T
T
-
C
T
A
2
C
?
G