Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
  Home     Edit Strains     Edit Gene List     Sequence Annotation
 Assembly Rnor_5.0
   

Chromosome Start Position Stop Position
Region Size: 55,313 (bp)   Positions: 102
Conservation 
Genes ( + ) 
Genes ( - ) 
Rnor 5.0  
GK/Ox (KNAW) 
.114
.046
.027
.02
.001
.002
.003
.001
.001
.001
.012
.003
.003
.002
.006
.008
.005
.004
.018
.117
.117
.04
.001
.0
.191
.011
.002
--
.122
.046
.004
.005
.009
.007
--
--
.002
.001
.009
.023
.001
.329
.008
.002
--
--
.013
--
--
--
--
--
.943
.511
.219
.139
.01
.009
--
.356
.13
.001
.001
.001
.017
.703
.83
--
.056
.089
.0
.005
.013
.029
.501
.294
.171
.039
.035
.002
.354
.262
.002
.035
.132
.137
.572
.02
.083
.002
.197
.429
.099
.149
.282
.119
.0
.263
.002
.006
.003
.126
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
LOC100910424
Pdcd6ip
Pdcd6ip
Pdcd6ip
Pdcd6ip
Pdcd6ip
Pdcd6ip
Pdcd6ip
Pdcd6ip
Pdcd6ip
Pdcd6ip
Pdcd6ip
C
A
2
7
T
T
G
A
C
G
A
G
A
A
C
T
A
G
G
T
G
C
T
A
A
A
G
A
T
C
G
A
2
C
A
A
C
A
G
G
A
A
2
G
G
T
15
C
C
A
A
12
C
T
4
C
T
2
T
T
G
G
A
T
T
A
A
2
A
T
G
A
C
7
G
T
C
T
G
C
G
T
G
A
A
G
T
A
T
A
T
C
C
G
T
T
T
C
T
C
C
G
  121,236,000
  121,236,295
  121,236,706
  121,236,711
  121,236,723
  121,236,726
  121,236,727
  121,236,745
  121,236,759
  121,236,760
  121,236,772
  121,236,788
  121,236,791
  121,236,799
  121,236,815
  121,236,821
  121,236,838
  121,236,849
  121,236,853
  121,236,885
  121,236,895
  121,236,899
  121,236,914
  121,236,951
  121,237,502
  121,240,756
  121,243,054
  121,248,947
  121,249,425
  121,250,049
  121,250,221
  121,250,222
  121,251,429
  121,251,430
  121,255,564
  121,255,565
  121,255,734
  121,255,747
  121,255,967
  121,256,921
  121,257,634
  121,257,867
  121,257,882
  121,259,812
  121,260,109
  121,260,123
  121,260,423
  121,262,120
  121,262,133
  121,262,134
  121,263,672
  121,263,703
  121,266,789
  121,269,113
  121,270,934
  121,270,999
  121,271,028
  121,272,058
  121,274,329
  121,274,654
  121,275,217
  121,275,728
  121,276,765
  121,276,890
  121,277,359
  121,277,778
  121,277,838
  121,278,417
  121,278,479
  121,278,817
  121,278,920
  121,278,952
  121,279,213
  121,279,247
  121,279,657
  121,279,693
  121,279,704
  121,280,201
  121,280,305
  121,280,478
  121,280,497
  121,280,998
  121,281,083
  121,281,243
  121,281,723
  121,281,916
  121,282,079
  121,282,343
  121,282,612
  121,282,755
  121,282,930
  121,282,982
  121,283,234
  121,283,257
  121,283,540
  121,283,866
  121,284,608
  121,285,169
  121,285,265
  121,285,587
  121,286,328
  121,286,939
T
G
-
-
C
A
T
C
A
C
T
T
-
2
A
-
-
T
-
-
-
-
-
G
C
-
A
G
C
A
G/3
A/-
-
C/-
A/2
A/C
T
T
A
A
G
A/2
2/-
A
A
C
15/-
T
C/2
A/-
C
-
T
C
-
T
C
-
C
C
A
A
G
A
-
2
G
-
G
C
A
2
T
-
A
3
G
A
A
T
A
2
A
C
G
A
G
T
C
T
C
T
T
A
G
C
C
A
C
T
2
A