Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
  Home     Edit Strains     Edit Gene List     Sequence Annotation
 Assembly Rnor_5.0
   

Chromosome Start Position Stop Position
Region Size: 250,847 (bp)   Positions: 163
Conservation 
Genes ( + ) 
Genes ( - ) 
Rnor 5.0  
WKY/NHsd (KNAW) 
.661
.679
.999
.978
.99
.0
.233
.442
.04
.564
.513
.138
.0
.012
.007
.349
.586
.048
--
--
--
--
.0
.104
.0
.0
.743
--
--
.055
.002
.022
.053
.009
.048
--
--
--
.005
.041
.011
.006
.792
.027
.003
.002
--
--
--
--
--
--
.735
.001
.615
.012
.492
.486
.001
.017
--
.278
.479
.02
.147
--
--
--
--
--
--
--
.207
.096
.068
.013
.016
.009
.005
--
--
.134
.113
.268
.011
.367
.025
--
--
.182
.021
.253
--
.01
--
.001
.078
.129
.015
.007
.005
--
--
--
--
--
--
--
.002
.0
.108
.064
.075
.129
.007
.033
.007
.005
.031
.337
.341
.345
.253
.217
.117
.467
.015
.18
.354
.748
.024
.005
.016
.004
--
--
--
.231
--
--
--
--
--
.398
.154
--
.105
.391
.046
.976
.976
.97
.758
.361
.095
.08
.032
.02
.013
.999
.781
.91
.037
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
Ncoa1
Ncoa1
Ncoa1
Ncoa1
Ncoa1
Ncoa1
Ncoa1
Ncoa1
Ncoa1
Ncoa1
Ncoa1
Ncoa1
Ncoa1
Ncoa1
Ncoa1
Ncoa1
Ncoa1
A
A
C
C
T
G
C
12
A
A
C
4
18
A
G
T
A
G
T
C
T
T
G
T
A
T
T
T
C
T
3
2
T
2
A
T
T
10
32
12
G
G
14
G
T
A
A
3
2
G
C
G
2
C
T
G
C
T
2
G
9
G
2
T
2
A
A
C
G
G
A
T
A
C
A
G
G
G
C
G
C
G
A
A
G
29
C
C
T
C
C
C
T
A
2
C
2
C
T
G
G
T
T
T
A
6
G
A
G
T
T
G
C
4
C
4
C
T
G
T
G
T
A
A
G
2
T
G
T
G
G
A
C
A
T
2
T
G
C
7
T
C
A
8
12
80
A
G
T
T
C
A
G
G
G
A
T
A
T
G
T
G
A
  38,484,323
  38,484,352
  38,484,928
  38,485,075
  38,487,584
  38,487,819
  38,488,251
  38,490,314
  38,490,980
  38,491,092
  38,491,230
  38,493,403
  38,495,059
  38,497,123
  38,499,114
  38,500,186
  38,500,267
  38,501,825
  38,502,353
  38,502,795
  38,508,937
  38,511,799
  38,512,654
  38,514,133
  38,518,342
  38,521,830
  38,523,288
  38,530,583
  38,530,625
  38,534,086
  38,534,132
  38,534,370
  38,543,028
  38,543,524
  38,544,183
  38,545,490
  38,545,596
  38,545,663
  38,546,789
  38,549,507
  38,554,920
  38,556,632
  38,557,166
  38,557,486
  38,559,884
  38,559,889
  38,564,824
  38,565,130
  38,565,131
  38,565,251
  38,565,542
  38,567,158
  38,570,411
  38,574,137
  38,577,453
  38,578,055
  38,581,815
  38,581,816
  38,588,226
  38,589,963
  38,592,530
  38,596,225
  38,603,652
  38,608,222
  38,608,936
  38,610,771
  38,611,491
  38,615,180
  38,615,201
  38,615,324
  38,616,672
  38,616,696
  38,617,059
  38,617,975
  38,617,983
  38,617,990
  38,617,994
  38,618,005
  38,629,658
  38,632,806
  38,635,797
  38,636,903
  38,636,904
  38,638,277
  38,638,638
  38,638,787
  38,639,279
  38,640,497
  38,640,506
  38,641,148
  38,642,532
  38,649,669
  38,651,588
  38,652,074
  38,652,435
  38,654,383
  38,654,862
  38,655,858
  38,656,635
  38,657,568
  38,658,818
  38,659,578
  38,659,954
  38,660,001
  38,660,847
  38,661,663
  38,661,854
  38,663,509
  38,664,263
  38,664,435
  38,664,524
  38,664,562
  38,665,270
  38,665,290
  38,665,500
  38,666,166
  38,667,081
  38,669,168
  38,670,488
  38,670,654
  38,670,655
  38,670,857
  38,671,472
  38,671,475
  38,671,667
  38,672,327
  38,673,041
  38,673,934
  38,675,012
  38,675,658
  38,675,832
  38,676,203
  38,676,330
  38,676,440
  38,682,740
  38,686,375
  38,687,918
  38,688,460
  38,691,870
  38,693,703
  38,694,637
  38,694,664
  38,698,355
  38,716,367
  38,720,723
  38,729,095
  38,729,441
  38,732,474
  38,732,479
  38,732,496
  38,732,501
  38,732,503
  38,732,526
  38,732,539
  38,732,546
  38,732,548
  38,732,552
  38,732,555
  38,732,557
  38,732,661
  38,733,393
  38,733,603
  38,734,275
G
G
-
T
4
A
5
-
G
G
T
4/-
-
A/-
T
A
C
A
G
-
5
A
A
9/7
C
T/2
T/-
C
T
A
-
-
-
-
-
G
-
10/-
-
-
A
A
-
A
-
-
5
3/-
2/-
7
14
24
-
6
-
A
C/2
T/-
2/-
2
-
T
-
T/-
-
A/4
-
C/2
G/A
G/3
T
9
C
2
2
-
T
T
T
T
T
A
G
T
A
-
A
-
C
T
T
C/2
2
-
-
T
-
4
G
C
A
C
2
C
G
-
A
3
A
C
C
A
T
-
T
-
G
C
A
A
C
C
-
C
C
-
C
A
C
A
A
G
T
G
-
-
C
-
T
-
7
T
5
-
-
-
G
A
-
A
A
2
T
-
-
-
-
2
A
T
-
A
G