Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
  Home     Edit Strains     Edit Gene List     Sequence Annotation
 Assembly Rnor_5.0
   

Chromosome Start Position Stop Position
Region Size: 93,360 (bp)   Positions: 335
Conservation 
Genes ( + ) 
Genes ( - ) 
Rnor 5.0  
F344/NRrrc (SOLiD) (KNAW) 
.983
.066
.945
.998
1.0
.034
.316
.0
.961
.433
.145
.002
.017
.011
.008
--
--
--
--
--
.039
.008
.001
.267
.021
.043
--
.001
.0
.001
.009
.161
.005
.172
.014
.006
.001
.011
.003
.001
.004
.001
.0
.0
.009
.086
.0
.0
.004
.003
.015
.0
.0
.012
.005
.0
.001
.016
.352
.058
.002
.003
.025
.059
.273
.001
.0
.009
.0
.004
.007
.003
.003
.505
.061
.031
.026
.527
.019
.036
.067
.049
.001
.0
.021
.429
.361
.0
.004
.039
.232
.043
.039
.102
.09
.033
.022
.021
.0
.196
.221
.132
.037
.011
.046
.016
.001
.012
.006
.044
.011
.002
.002
.097
.107
.038
.021
.002
.007
.003
.627
.004
.002
.068
.015
.054
.067
.023
.001
.006
.0
.0
.004
.003
.009
.002
.0
.026
.006
.002
.001
.005
.005
.248
.801
.031
.023
.002
.003
.0
.668
.001
.939
.004
.001
.085
.011
.072
.099
.018
.39
.06
.005
.046
.0
.0
.15
.259
.678
.007
.06
.002
.003
.001
.0
.126
.001
.0
.008
.008
.017
.9
.011
.994
.001
.029
.005
.105
.257
.007
.006
.043
.004
.027
.079
.0
.002
.0
.01
.022
.0
.001
.275
.0
.004
.001
.012
--
--
--
.183
.993
.041
.002
.0
.171
.008
.0
.0
.018
.002
.013
.0
.015
.0
.004
.0
.007
.217
.001
.0
.0
.0
.882
.001
.002
.074
.144
.019
.034
.05
.081
.021
.006
.976
.001
--
--
.041
.07
.045
.005
.001
.0
.0
.004
.002
.016
.958
.032
.006
.006
.033
.035
.018
.253
.799
.325
.001
.0
.0
.506
.966
.006
.011
.0
.002
.0
.0
.006
.06
.006
.0
.0
.0
.032
.0
.001
.014
.001
.0
.0
.004
.0
.0
.002
.0
.008
.011
.003
.001
.02
.0
.003
.172
.001
.004
.181
.002
.0
.911
.029
1.0
.0
.004
.101
.034
.0
.054
.002
.06
.055
.004
.007
.011
.002
.001
.001
.002
.104
.12
.017
.675
.496
.03
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
Map1b
Map1b
Map1b
Map1b
Map1b
Map1b
Map1b
Map1b
Map1b
Map1b
Map1b
Map1b
Map1b
Map1b
Map1b
Map1b
Map1b
Map1b
Map1b
Map1b
Map1b
Map1b
Map1b
Map1b
Map1b
Map1b
Map1b
Map1b
Map1b
Map1b
Map1b
Map1b
Map1b
Map1b
T
G
A
T
T
T
3
T
T
C
C
G
G
C
G
4
T
A
A
A
T
G
A
16
T
C
C
G
T
A
G
G
A
T
A
C
A
C
C
G
G
A
C
G
C
A
T
A
C
G
T
C
C
T
C
C
T
C
C
T
G
G
T
T
A
G
T
T
C
C
T
T
A
A
C
G
T
T
T
A
T
A
C
T
C
A
C
G
T
A
A
4
C
A
C
A
A
A
T
C
C
C
G
A
C
A
T
T
C
C
G
C
G
T
A
C
C
G
A
T
G
G
A
A
T
C
A
T
A
T
A
T
C
G
G
G
A
T
A
C
T
T
G
T
G
G
A
4
T
A
C
G
G
A
C
T
T
C
A
2
C
C
A
C
T
T
T
T
G
A
C
T
C
C
C
T
T
G
A
T
C
4
A
C
T
C
G
A
A
A
T
T
C
T
G
G
G
C
T
A
A
T
T
G
A
A
T
2
G
A
T
G
T
T
T
T
T
G
C
C
C
T
C
T
A
G
T
T
T
T
C
G
T
C
A
2
G
T
G
T
C
G
T
G
A
G
T
3
C
A
T
G
C
G
C
C
T
T
C
G
T
T
C
G
T
T
3
T
A
T
G
A
C
C
T
C
A
T
T
A
T
T
T
T
G
T
T
G
T
T
A
T
2
2
T
T
C
A
G
C
C
A
C
C
T
A
A
A
A
C
G
C
A
A
A
C
A
G
C
C
T
T
A
C
C
A
C
T
G
A
4
T
A
3
G
  48,837,192
  48,838,693
  48,839,407
  48,840,987
  48,845,511
  48,846,409
  48,847,983
  48,847,991
  48,849,938
  48,851,991
  48,852,151
  48,852,961
  48,853,142
  48,853,248
  48,853,381
  48,853,436
  48,853,456
  48,853,480
  48,853,493
  48,853,602
  48,853,683
  48,853,724
  48,853,924
  48,854,045
  48,854,118
  48,854,186
  48,854,406
  48,854,771
  48,854,986
  48,855,009
  48,855,014
  48,855,359
  48,855,621
  48,855,945
  48,856,288
  48,856,446
  48,856,933
  48,857,161
  48,857,837
  48,857,898
  48,858,190
  48,858,394
  48,859,195
  48,859,500
  48,860,056
  48,860,394
  48,860,459
  48,860,538
  48,860,610
  48,861,042
  48,861,453
  48,861,762
  48,862,968
  48,863,006
  48,863,017
  48,863,457
  48,863,546
  48,863,992
  48,865,180
  48,865,193
  48,865,685
  48,865,706
  48,865,731
  48,865,734
  48,865,851
  48,865,924
  48,866,324
  48,866,550
  48,866,678
  48,867,875
  48,868,178
  48,869,068
  48,870,612
  48,870,762
  48,871,404
  48,871,507
  48,871,524
  48,872,212
  48,873,059
  48,873,228
  48,873,523
  48,873,722
  48,874,212
  48,874,276
  48,874,694
  48,875,520
  48,875,613
  48,875,892
  48,876,309
  48,876,447
  48,876,601
  48,876,613
  48,876,675
  48,876,774
  48,876,785
  48,876,956
  48,876,960
  48,876,962
  48,877,085
  48,877,269
  48,877,287
  48,877,339
  48,877,350
  48,877,534
  48,877,554
  48,877,619
  48,877,629
  48,877,801
  48,877,812
  48,878,029
  48,878,054
  48,878,063
  48,878,088
  48,878,163
  48,878,172
  48,878,212
  48,878,238
  48,878,247
  48,878,263
  48,878,269
  48,878,446
  48,878,503
  48,878,707
  48,878,743
  48,879,029
  48,879,077
  48,879,300
  48,879,307
  48,879,323
  48,879,446
  48,879,456
  48,879,580
  48,879,732
  48,879,818
  48,879,866
  48,879,900
  48,879,984
  48,879,992
  48,880,073
  48,880,403
  48,880,447
  48,880,728
  48,880,788
  48,881,287
  48,881,304
  48,882,567
  48,882,834
  48,883,130
  48,883,643
  48,883,718
  48,884,305
  48,884,374
  48,884,452
  48,884,767
  48,884,785
  48,884,826
  48,885,098
  48,885,171
  48,885,430
  48,886,174
  48,886,275
  48,886,372
  48,886,376
  48,886,505
  48,886,679
  48,886,680
  48,886,831
  48,886,845
  48,887,105
  48,887,158
  48,887,365
  48,887,824
  48,887,923
  48,888,539
  48,888,597
  48,888,653
  48,889,268
  48,889,471
  48,889,914
  48,890,204
  48,892,029
  48,892,208
  48,893,024
  48,893,485
  48,894,102
  48,894,199
  48,894,528
  48,895,607
  48,896,227
  48,897,044
  48,897,526
  48,898,253
  48,898,473
  48,898,680
  48,899,378
  48,900,828
  48,900,928
  48,900,996
  48,901,045
  48,901,117
  48,901,211
  48,901,235
  48,901,313
  48,902,967
  48,903,008
  48,903,374
  48,904,264
  48,904,640
  48,904,863
  48,905,025
  48,905,198
  48,905,605
  48,905,794
  48,905,931
  48,906,010
  48,906,324
  48,906,504
  48,906,765
  48,907,195
  48,907,565
  48,907,806
  48,907,809
  48,908,049
  48,908,493
  48,908,551
  48,908,721
  48,908,728
  48,908,737
  48,909,169
  48,909,466
  48,909,499
  48,909,696
  48,909,764
  48,910,047
  48,910,096
  48,910,266
  48,910,401
  48,910,424
  48,910,559
  48,910,584
  48,910,593
  48,910,910
  48,911,309
  48,911,346
  48,911,995
  48,912,386
  48,912,758
  48,913,115
  48,913,710
  48,913,786
  48,913,989
  48,914,190
  48,914,271
  48,914,294
  48,914,602
  48,914,935
  48,914,974
  48,915,138
  48,915,275
  48,915,345
  48,915,386
  48,915,834
  48,916,002
  48,916,005
  48,916,073
  48,916,074
  48,916,106
  48,916,112
  48,916,518
  48,916,731
  48,916,737
  48,916,781
  48,916,833
  48,917,382
  48,917,385
  48,917,474
  48,917,607
  48,917,610
  48,917,617
  48,917,694
  48,917,713
  48,917,850
  48,917,875
  48,918,030
  48,918,159
  48,918,240
  48,918,267
  48,918,429
  48,918,532
  48,918,547
  48,918,568
  48,918,671
  48,918,764
  48,918,895
  48,918,989
  48,919,411
  48,920,015
  48,920,468
  48,920,846
  48,920,877
  48,921,013
  48,921,295
  48,921,397
  48,921,399
  48,921,823
  48,922,134
  48,922,520
  48,922,557
  48,922,613
  48,922,978
  48,923,341
  48,923,658
  48,923,886
  48,924,274
  48,924,728
  48,924,800
  48,925,087
  48,925,207
  48,925,296
  48,925,424
  48,925,447
  48,925,448
  48,925,921
  48,925,935
  48,926,041
  48,926,251
  48,926,585
  48,926,812
  48,927,087
  48,927,284
  48,927,455
  48,927,709
  48,928,425
  48,928,507
  48,929,450
T/-
3/4
G
C
T/C
A
-
C
C
T
5
C
2
T
A
-
C
C
G
T
T/A
T
G
16/-
A
T
C/A
A
T/A
C
A
A
C
C
-
T
G
T
A
A
A
G
T
C
T
G
C
G
A
2
-
T
T
C
2
G
T/C
T
C/T
C
A
A
A
-
-
C
C
C
T
T
C
-
G
2
T
A
-
C
C
A/C
2
A/2
T
C
T
-
T
A
G
G
G
-
T
G
A
2
G
G
C
A
A
T
A
C
T
A/G
C
C
G
T
2
T
T
C
A/C
A
T
A
G
A
A
A
G
G
C
T
C
A
G
C
G
C
A
A
A
G/2
G
A
C
T
C
4
A
G
A
T
A/2
-
C
G
C/G
A
A
T
G
C
G
T
G
2/-
T
T
G
-
2
A
T/2
C
A
G
T
G
C/T
C/T
T
T/-
C
A
C
C
T
-
G
T
C
-
C
2
A/3
G
A
C
2
G
A
A
A
C/G
G
3
G
C
C
-
A/T
G
C
-
G/5
G
C
G/3
C
4
C
C
G
A
T
T
T
3
4
C
G
A
C
C
C
A
A
C
2
T
C
-
A
C
A
A
C/-
A
2
A
C
T
C
-
T
C
C
G/-
T
A
T
T
G
T/C
2
T
T/A
4
T
A
G
C
3/-
T/C
G
G
A
G
T
T
C
T
A/T
T/7
C
G
C
C
A
C
A
C
19
A
C
C
G
A
-
-
C
22
G
G
T
G
T
G
5
C/5
G
G
G
2
T
T
A
A
G
G
G
A
T
A
G
C/T
T/G
T/G
A/C
T
T
G
T
2
C
G
4/-
T/5
G
3/-
-