Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
  Home     Edit Strains     Edit Gene List     Sequence Annotation
 Assembly Rnor_5.0
   

Chromosome Start Position Stop Position
Region Size: 100,024 (bp)   Positions: 332
Conservation 
Genes ( + ) 
Genes ( - ) 
Rnor 5.0  
SBH/Ygl (KNAW) 
.0
.0
.619
.995
.998
.0
.0
.0
.056
.027
.006
.0
.032
.0
.002
.21
.003
.507
.143
.074
.579
.045
.062
.036
.278
.043
.246
.115
.78
.099
.024
.055
.252
.022
.187
.187
--
.072
.017
.009
--
--
.366
.404
.411
.552
--
--
--
.844
.019
.151
.001
.003
.205
.431
.058
.143
.059
.076
--
--
.001
.001
.006
.747
.477
--
--
--
--
--
--
--
--
.014
.506
.02
.062
.285
.054
.182
.111
.081
--
--
--
--
--
--
--
--
--
--
--
.202
.627
.668
.433
.402
.107
.027
.08
.006
.132
.001
.099
.067
.158
--
.142
.013
.032
.233
.009
.021
.003
.004
.151
.236
.346
.583
.393
.142
.358
.422
.017
.441
.027
.028
.144
.001
.027
.014
.028
--
--
.121
.011
.273
.219
.826
.052
.896
.828
.156
.052
.019
.007
.0
.0
--
--
--
.061
.817
1.0
.969
.011
.328
.681
.003
.001
.041
--
.094
.0
.033
.011
.0
.921
--
--
.051
.013
.051
.64
.008
.004
.011
.002
.079
.341
.014
.22
.976
.92
.004
--
.001
.23
.094
.077
.082
.07
.085
.057
.03
.289
.252
.001
.007
.006
.014
.002
.0
.0
.001
.004
.973
.137
.001
.025
.326
.25
.136
.034
.017
.236
.012
.005
.076
.075
--
.134
.058
.392
.356
.042
.952
.0
.003
.001
.007
.003
.008
.005
.014
--
.009
.096
.044
.0
.11
.001
.005
.113
.46
.442
.238
.005
.023
.0
.971
.954
.975
.0
1.0
.2
.568
.969
.724
.748
.975
.732
.465
.226
.037
.03
.039
.998
.993
.997
.028
.034
.085
.001
.014
.025
.002
.001
.044
.036
--
--
--
--
--
--
.001
.001
.017
.0
.189
.283
.202
.004
.025
.001
.0
.19
.051
.048
.029
.004
.009
--
.063
.088
.026
.004
.004
.003
.013
.002
.07
.0
--
.012
.067
.0
.003
.002
.0
.001
.002
.304
.006
.998
.014
.926
.751
Lcor
Lcor
Lcor
Lcor
Lcor
Lcor
Lcor
Lcor
Lcor
Lcor
Lcor
Lcor
Lcor
Lcor
Lcor
Lcor
Lcor
Lcor
Lcor
Lcor
Lcor
Lcor
Lcor
Lcor
Lcor
Lcor
Lcor
Lcor
Lcor
Lcor
Lcor
Lcor
Lcor
Lcor
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
7
A
A
C
T
A
G
A
A
7
A
C
T
T
T
4
G
T
G
A
C
T
G
T
G
C
111
T
G
A
A
C
C
C
T
3
G
T
A
T
T
9
T
C
2
T
A
G
T
T
C
3
T
T
C
C
A
C
C
C
G
A
2
T
T
A
A
G
22
A
A
A
A
C
C
T
C
T
4
T
A
G
T
C
A
T
43
16
T
C
A
2
T
C
C
G
C
A
A
T
T
C
T
G
12
56
A
A
2
4
6
C
G
T
T
C
C
T
A
A
A
G
C
G
G
C
T
G
6
2
G
T
A
4
G
G
G
T
T
C
A
A
C
A
C
G
T
T
A
A
T
C
A
3
C
T
G
C
C
G
G
T
2
T
G
A
T
A
T
A
T
A
A
G
T
A
G
G
T
A
T
A
C
C
T
A
C
T
T
A
C
A
A
T
G
A
A
G
A
T
112
A
G
A
C
G
T
G
C
T
G
A
T
G
A
6
G
C
T
T
G
T
A
122
C
G
T
T
T
G
T
G
C
C
G
G
A
4
C
A
A
C
A
4
A
T
C
G
C
A
T
G
C
A
A
C
C
A
24
T
G
A
5
18
A
A
A
G
G
G
T
2
G
A
A
T
G
G
C
G
A
G
2
C
A
A
A
A
T
C
A
T
A
A
A
T
C
G
C
C
G
A
A
A
A
A
G
C
T
C
C
C
9
C
T
T
G
T
T
T
C
A
G
C
T
C
G
G
A
G
T
C
  268,188,525
  268,188,538
  268,188,984
  268,189,268
  268,189,505
  268,190,641
  268,190,888
  268,190,889
  268,191,397
  268,191,580
  268,191,846
  268,192,316
  268,192,739
  268,192,801
  268,193,051
  268,194,283
  268,194,548
  268,194,746
  268,195,064
  268,195,752
  268,195,937
  268,196,009
  268,196,240
  268,196,418
  268,196,502
  268,196,648
  268,196,786
  268,197,369
  268,197,639
  268,198,852
  268,199,139
  268,199,143
  268,199,693
  268,200,374
  268,200,761
  268,200,763
  268,201,165
  268,201,495
  268,201,555
  268,201,685
  268,201,691
  268,201,695
  268,202,585
  268,202,597
  268,202,599
  268,202,623
  268,202,872
  268,202,900
  268,202,907
  268,203,029
  268,203,122
  268,203,706
  268,204,522
  268,204,658
  268,204,727
  268,205,280
  268,205,658
  268,205,679
  268,206,048
  268,206,080
  268,206,221
  268,206,223
  268,206,300
  268,206,301
  268,206,611
  268,206,857
  268,206,882
  268,207,176
  268,207,224
  268,207,247
  268,207,249
  268,207,422
  268,207,488
  268,207,572
  268,208,291
  268,208,378
  268,208,595
  268,209,207
  268,209,441
  268,210,157
  268,210,468
  268,210,539
  268,210,945
  268,211,051
  268,211,505
  268,211,528
  268,211,540
  268,211,625
  268,211,737
  268,211,923
  268,211,988
  268,212,004
  268,212,186
  268,212,524
  268,212,744
  268,213,848
  268,214,448
  268,214,471
  268,214,672
  268,214,949
  268,215,014
  268,215,162
  268,215,362
  268,215,997
  268,216,007
  268,216,037
  268,216,291
  268,216,362
  268,216,755
  268,216,846
  268,217,298
  268,217,322
  268,217,324
  268,217,349
  268,217,766
  268,217,781
  268,217,912
  268,217,924
  268,218,210
  268,218,615
  268,218,797
  268,218,914
  268,219,029
  268,219,108
  268,219,661
  268,219,681
  268,219,820
  268,220,413
  268,220,772
  268,221,023
  268,221,065
  268,221,352
  268,221,468
  268,222,015
  268,222,181
  268,222,260
  268,222,397
  268,222,462
  268,222,628
  268,222,747
  268,222,751
  268,222,891
  268,223,108
  268,224,339
  268,224,459
  268,224,489
  268,224,524
  268,224,618
  268,224,919
  268,225,581
  268,225,618
  268,226,036
  268,226,255
  268,226,270
  268,226,361
  268,226,821
  268,226,953
  268,227,304
  268,227,736
  268,228,043
  268,228,530
  268,228,813
  268,229,179
  268,229,315
  268,230,690
  268,230,746
  268,231,502
  268,232,188
  268,232,665
  268,232,939
  268,233,274
  268,233,339
  268,233,349
  268,233,554
  268,233,609
  268,233,614
  268,235,183
  268,235,703
  268,235,707
  268,235,761
  268,235,828
  268,236,378
  268,236,409
  268,237,926
  268,238,039
  268,238,839
  268,238,883
  268,239,159
  268,240,193
  268,240,271
  268,240,752
  268,240,944
  268,241,019
  268,241,762
  268,241,846
  268,242,679
  268,243,193
  268,243,480
  268,243,644
  268,244,432
  268,244,551
  268,244,939
  268,245,779
  268,246,215
  268,246,385
  268,246,390
  268,246,391
  268,246,396
  268,246,553
  268,246,832
  268,247,204
  268,247,317
  268,247,602
  268,247,861
  268,247,966
  268,248,192
  268,248,233
  268,248,248
  268,248,374
  268,249,400
  268,249,931
  268,250,802
  268,250,936
  268,251,457
  268,251,901
  268,251,909
  268,252,017
  268,252,130
  268,252,918
  268,253,281
  268,253,827
  268,253,851
  268,254,022
  268,254,071
  268,254,103
  268,254,220
  268,254,255
  268,254,594
  268,254,927
  268,255,000
  268,255,224
  268,255,579
  268,255,698
  268,255,893
  268,256,593
  268,257,583
  268,257,727
  268,258,106
  268,258,118
  268,258,137
  268,258,177
  268,258,216
  268,258,428
  268,258,834
  268,258,844
  268,258,852
  268,258,872
  268,259,617
  268,260,406
  268,261,710
  268,261,905
  268,263,135
  268,264,852
  268,265,019
  268,265,040
  268,265,042
  268,265,044
  268,265,218
  268,265,293
  268,265,935
  268,266,494
  268,266,697
  268,266,871
  268,268,903
  268,269,002
  268,269,061
  268,269,096
  268,269,374
  268,269,546
  268,269,874
  268,270,046
  268,270,095
  268,270,215
  268,270,490
  268,270,520
  268,270,522
  268,270,536
  268,270,592
  268,270,675
  268,271,032
  268,271,033
  268,271,044
  268,271,121
  268,271,229
  268,271,685
  268,271,793
  268,271,920
  268,271,958
  268,272,015
  268,272,320
  268,272,408
  268,273,265
  268,273,355
  268,273,603
  268,273,641
  268,273,667
  268,273,928
  268,274,075
  268,274,198
  268,274,233
  268,274,271
  268,274,377
  268,274,378
  268,274,649
  268,274,826
  268,275,240
  268,275,362
  268,275,727
  268,275,976
  268,275,983
  268,277,300
  268,277,864
  268,279,851
  268,282,044
  268,282,049
  268,282,050
  268,282,773
  268,283,030
  268,284,192
  268,286,851
  268,287,348
  268,287,704
-
G
T
A
A
G
T
T
2
-
G
T
4
C
-
-
A
-
A
2
T
C
2
C
7/9
T
-
2
2
-
C
T
T
T
-
-
A
G
G
G
C
9/-
C
4
-
5
G
C
T/-
-
-
-
-
C
T
3
G
T
3
T
A
G
2/-
-
C
-
2
C
-
T
T
G
G
2
T
C
T
C
-
A
C
5
-
G
2
C
-
-
3
T
5
-
C
A
2
A
A
T
C
G
C
T
G
A
-
-
G
G
-
-
-
T
A
C
C
T
T
C
G
-
-
A
2
A
A
T
C
A
-
-
A
2
-
-
A
3/GA
T
G
C
3
C
G
3
G
T
A
-
C
9
G
C
2
G
-
4
-
T
T
T
A
A
C
-
A
-
7
C
C
C
T
-
G
G
A
C
T
T
A
C
-
A
T
T
T
G
-
2
C
C
G
G
G
C
2
A
-
-
A
G
C
-
G
A
G
T
A
G
C
G
A
3
T
A
A
G
-
A
T
C
2
A
A
T
-
-
A
C
A
C
A
C
-
2
T
A
A
G
-
A
G
G
T
2
-
G
A
T
A
T
C
5
A
T
C
C
A
2
G
-
C
A
-
-
-
G
G
G
C
A
2
C
-
2
G
-
C
A
A
T
2
G
A
-
T
-
G
2
G
2
4
G
2
-
C
T
C
T
A
G
G
A
G
T
G
C
3
7
5
C
3
A
C/4
-
T
C
C
6
G
-
A
3
-
A
A
A
G
T
A
G
A
2
2