Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
  Home     Edit Strains     Edit Gene List     Sequence Annotation
 Assembly Rnor_5.0
   

Chromosome Start Position Stop Position
Region Size: 62,258 (bp)   Positions: 187
Conservation 
Genes ( + ) 
Genes ( - ) 
Rnor 5.0  
SHR/OlaIpcv (KNAW) 
.045
.012
.168
.0
.003
.03
.01
.014
.0
.011
--
--
--
.004
.039
.044
--
.067
--
.169
.003
--
--
--
--
--
.0
.208
.697
.651
.098
.012
.954
.057
--
--
--
--
--
.006
.009
.002
.007
.016
.203
.533
.085
.043
.112
.233
.992
.669
.248
.319
.055
.072
.02
.001
.012
.023
--
--
.009
.84
.025
.595
.223
.024
.008
.002
.0
.012
.007
.015
.996
.193
.238
.002
.137
--
--
--
.057
.012
.035
.269
.168
.003
.309
.206
.014
.0
.796
.664
.014
.131
.02
.0
.006
.001
.0
.056
.009
.877
.116
.105
.001
.001
.009
.2
.002
.014
.003
.0
.016
.085
.162
.06
.014
.006
.868
.532
.366
.017
--
--
--
--
--
--
--
--
--
.019
--
--
--
--
--
--
--
--
--
--
.053
.076
.051
.023
.117
.009
.025
.007
.004
.671
.57
.005
--
--
--
--
--
--
--
--
--
--
.006
.005
.035
.011
.015
.013
--
--
--
--
.001
.0
.001
.252
.087
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
Herc6
Herc6
Herc6
Herc6
Herc6
Herc6
Herc6
Herc6
Herc6
Herc6
Herc6
Herc6
Herc6
Herc6
Herc6
Herc6
Herc6
Herc6
Herc6
C
G
T
G
T
A
A
A
G
C
20
10
G
G
A
T
G
G
A
C
T
11
A
T
A
T
C
G
G
C
T
C
6
A
G
G
G
G
G
15
C
G
C
T
C
A
C
A
A
T
G
C
G
T
C
T
G
C
T
T
30
T
G
C
C
C
T
G
A
C
T
G
T
A
A
C
A
T
A
G
G
T
A
G
G
T
T
T
T
T
T
C
A
T
A
A
C
T
A
C
A
4
C
G
T
G
T
C
G
24
C
G
C
A
G
C
C
G
C
A
G
A
C
G
A
T
T
T
C
C
A
A
A
A
C
G
A
T
T
A
C
G
G
A
A
T
T
C
T
A
C
G
C
A
T
T
G
A
A
C
A
C
G
C
C
T
T
T
G
A
C
4
A
2
A
G
T
T
C
C
G
G
G
G
G
G
T
  153,429,667
  153,429,937
  153,430,355
  153,433,944
  153,434,483
  153,435,428
  153,436,175
  153,436,530
  153,436,828
  153,437,099
  153,437,324
  153,437,334
  153,438,904
  153,441,039
  153,441,174
  153,441,281
  153,441,473
  153,442,033
  153,442,640
  153,442,886
  153,442,964
  153,443,186
  153,444,742
  153,446,148
  153,446,356
  153,446,536
  153,447,430
  153,448,065
  153,448,348
  153,448,380
  153,448,600
  153,448,834
  153,449,085
  153,450,770
  153,452,424
  153,452,428
  153,452,430
  153,452,474
  153,452,488
  153,453,644
  153,453,700
  153,453,847
  153,453,961
  153,454,625
  153,455,234
  153,455,417
  153,456,034
  153,456,589
  153,457,010
  153,457,270
  153,457,642
  153,458,664
  153,458,928
  153,458,933
  153,459,296
  153,459,419
  153,461,629
  153,461,660
  153,461,711
  153,461,779
  153,461,948
  153,462,005
  153,462,157
  153,462,865
  153,463,005
  153,463,357
  153,463,606
  153,463,741
  153,463,760
  153,463,883
  153,463,923
  153,464,240
  153,464,359
  153,464,382
  153,464,407
  153,464,506
  153,464,552
  153,464,776
  153,464,799
  153,465,252
  153,465,513
  153,465,610
  153,465,690
  153,465,884
  153,466,639
  153,466,745
  153,467,124
  153,467,134
  153,467,261
  153,467,582
  153,468,178
  153,468,335
  153,468,608
  153,468,778
  153,468,819
  153,468,846
  153,468,911
  153,469,338
  153,469,390
  153,469,442
  153,469,505
  153,469,537
  153,469,723
  153,469,842
  153,470,556
  153,470,562
  153,470,594
  153,470,827
  153,471,015
  153,471,029
  153,471,089
  153,471,202
  153,471,325
  153,471,446
  153,471,699
  153,471,904
  153,472,228
  153,472,476
  153,472,731
  153,472,756
  153,473,766
  153,473,818
  153,473,862
  153,474,070
  153,474,132
  153,474,515
  153,474,789
  153,474,950
  153,475,166
  153,475,454
  153,475,561
  153,475,683
  153,475,711
  153,475,961
  153,476,037
  153,476,086
  153,476,110
  153,476,116
  153,479,319
  153,480,761
  153,480,801
  153,481,001
  153,481,040
  153,481,114
  153,481,637
  153,481,699
  153,482,232
  153,482,484
  153,482,618
  153,482,839
  153,482,866
  153,483,953
  153,483,962
  153,484,027
  153,484,191
  153,484,286
  153,484,363
  153,484,464
  153,484,738
  153,485,501
  153,485,680
  153,486,117
  153,486,137
  153,486,177
  153,486,613
  153,486,716
  153,487,109
  153,487,347
  153,487,742
  153,487,828
  153,488,404
  153,488,627
  153,488,951
  153,489,031
  153,489,178
  153,489,427
  153,489,799
  153,489,800
  153,489,804
  153,490,008
  153,490,152
  153,490,208
  153,490,211
  153,490,214
  153,490,229
  153,490,370
  153,490,721
T
C
C
T
C
G
3
G
A
A
-
10/-
-
2
C
A
T
2
G
2
G
-
G
C
2
C
T
A
A
C/2
C
G
-
G
G/5
G/5
?
21
27
-
T
A
T
2
C/2
-
T
G
C
C
A
C/7
A
C
G
C
15
9/23
2
13
-
C
7
T
5
T
C
A
G
T
C
A
C
2
C
A
G
A
G
10
A
G
2
A
A
G
C
-
C
A
C
A
-
3
G
G
T
C
C
T
G
-
T
A
5
22
-
A
A
-
T
T
T
G
T
-
G
A
T
C
A
2
G
2
2
G
C
A
2
T
G
G
G
G
2
C
A/14
T/C
C
G
T
T
T
G
2
G
C
2
C
G
T
A
G
G
C
A
T
G
G
A
G
T
G/9
T
A
C
C
C
-
5
G
4/-
G
-
G
T
C
C
11
T
5
?
G/14
G/6
7
A
C