Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
  Home     Edit Strains     Edit Gene List     Sequence Annotation
 Assembly Rnor_5.0
   

Chromosome Start Position Stop Position
Region Size: 45,492 (bp)   Positions: 122
Conservation 
Genes ( + ) 
Genes ( - ) 
Rnor 5.0  
BBDP/WorN (KNAW) 
--
.028
.004
.038
.0
.0
--
.047
.0
.162
.027
--
--
--
--
.181
.006
--
--
--
--
--
.011
.001
.034
.002
.126
.158
.251
.113
.367
.315
.107
.104
.016
.011
.053
.001
.004
.004
.0
.001
.003
.003
.121
.973
.281
.086
.11
.134
.077
.183
.035
.001
.003
.086
.104
.036
--
--
--
--
--
--
--
--
.102
.071
.081
.093
.087
.083
.018
.09
.0
.229
.0
.075
.061
.055
.046
.051
.026
.006
.113
.74
.012
.241
.302
.285
.238
.077
.492
.436
.22
.01
.031
.05
--
--
--
--
--
.003
.007
.113
.013
--
--
.033
.0
.001
.002
--
--
--
.069
.275
.016
--
--
.332
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
Gtf2ird2
Gtf2ird2
Gtf2ird2
Gtf2ird2
Gtf2ird2
Gtf2ird2
Gtf2ird2
Gtf2ird2
Gtf2ird2
Gtf2ird2
Gtf2ird2
Gtf2ird2
Gtf2ird2
12
3
C
C
G
C
G
G
C
C
G
C
T
C
C
A
A
G
G
C
T
T
T
A
2
C
C
C
T
A
A
A
2
G
C
T
A
T
A
A
A
C
G
G
111
T
A
C
A
T
C
A
T
A
A
G
G
G
3
T
A
C
G
T
A
T
T
G
T
C
C
C
C
T
A
A
A
G
G
T
C
C
A
T
C
T
G
C
T
G
C
T
4
A
A
G
A
15
T
A
C
G
C
G
T
T
T
C
T
2
T
G
A
G
A
A
C
A
T
4
C
G
  27,520,341
  27,521,140
  27,521,147
  27,521,162
  27,521,990
  27,524,283
  27,524,946
  27,525,186
  27,525,558
  27,525,858
  27,525,928
  27,525,940
  27,525,958
  27,525,979
  27,526,010
  27,526,093
  27,526,172
  27,526,239
  27,526,240
  27,526,356
  27,526,411
  27,526,462
  27,526,616
  27,526,622
  27,526,638
  27,526,664
  27,526,785
  27,526,851
  27,526,864
  27,526,951
  27,527,123
  27,527,217
  27,527,310
  27,527,312
  27,527,449
  27,527,469
  27,527,580
  27,527,642
  27,527,663
  27,527,666
  27,527,692
  27,527,696
  27,527,750
  27,527,751
  27,527,931
  27,528,055
  27,528,144
  27,528,174
  27,528,194
  27,528,200
  27,528,263
  27,528,348
  27,528,385
  27,528,499
  27,528,752
  27,528,863
  27,528,901
  27,528,967
  27,528,986
  27,528,995
  27,529,003
  27,529,004
  27,529,017
  27,529,192
  27,529,288
  27,529,351
  27,531,530
  27,531,543
  27,531,761
  27,531,817
  27,531,859
  27,531,881
  27,531,928
  27,531,936
  27,532,058
  27,532,081
  27,532,117
  27,532,193
  27,532,199
  27,532,231
  27,532,236
  27,532,240
  27,532,286
  27,532,353
  27,532,390
  27,532,411
  27,532,464
  27,532,576
  27,532,600
  27,532,613
  27,532,624
  27,532,642
  27,532,861
  27,532,872
  27,532,891
  27,532,962
  27,532,972
  27,533,024
  27,533,138
  27,533,162
  27,533,190
  27,533,293
  27,533,303
  27,533,387
  27,533,406
  27,533,446
  27,534,626
  27,535,703
  27,535,704
  27,536,912
  27,537,470
  27,541,223
  27,542,196
  27,542,463
  27,542,464
  27,544,786
  27,558,256
  27,558,586
  27,558,915
  27,559,671
  27,560,880
  27,561,319
-
-
2
2
A
3
G/3
C
T
T
2
C/2
-
T
T
G
T
5
T
T
C
C
C
G
-
T
T
T
C
G
G
G
-
T
T
C
G
C
G
-
T
T
A
C
-
C
C
T
G
C
T
G
C
G
T
A
A
A
-
G
G
G
T
3
2
C
C
30
C
T
T
A
T
-
100
G
G
A
A
C
G
T
G
C
T
G
A
C/A
T/C
G/A
12
G
-
C
2
A
G
-
-
G
-
A
T
A
C
C
C
C/2
T/-
-
C
A
C
T
70
-
7/9
T
43
-
T
2