Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
  Home     Edit Strains     Edit Gene List     Sequence Annotation
 Assembly Rnor_5.0
   

Chromosome Start Position Stop Position
Region Size: 45,735 (bp)   Positions: 174
Conservation 
Genes ( + ) 
Genes ( - ) 
Rnor 5.0  
SR/JrHsd (MCW) 
.022
.118
.049
.036
.025
.012
.002
.023
.399
.248
.014
.003
.008
.164
.574
.027
.031
.025
.024
.027
.015
.001
.001
.072
.076
.0
.043
.114
.613
.049
.003
.058
.144
--
--
--
--
--
--
--
--
.005
.025
.005
.001
.316
.101
.002
.002
.031
.006
.0
.068
--
.032
.019
.017
.013
.015
.018
.066
.067
.058
.079
.002
.411
.001
.001
.862
.01
.078
.008
.0
.986
.816
.154
.159
.031
.006
.004
.157
.056
.442
.453
.004
.002
.001
.0
.0
.007
.001
.065
.001
.0
.004
.889
.136
.025
.065
.04
.042
.708
.031
.001
.0
.007
.029
.052
.001
.023
.206
.024
.06
.09
.007
.001
.002
.006
.385
--
--
.015
.0
.001
--
--
--
--
--
.044
--
--
--
--
--
.056
.0
.104
.018
.231
.195
.174
--
--
--
--
.286
.507
.521
.479
.652
.091
.0
.0
.056
.101
.006
.035
.004
.001
.005
.052
.052
--
--
.149
.0
.0
.014
.014
.027
.385
.177
.121
Fez1
Fez1
Fez1
Fez1
Fez1
Fez1
Fez1
Fez1
Fez1
Fez1
Fez1
Fez1
Fez1
Fez1
Fez1
Fez1
Fez1
Fez1
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
C
G
11
7
3
C
C
C
C
3
C
T
T
16
C
T
C
G
C
T
A
A
A
T
A
C
5
A
G
G
C
T
G
G
G
G
G
G
G
G
G
T
T
G
C
C
T
T
T
G
T
T
G
C
A
A
A
A
A
A
12
2
G
G
A
G
C
G
A
T
T
T
G
A
A
G
A
T
C
C
A
T
T
C
T
G
A
G
A
C
G
T
G
T
T
T
C
C
A
C
G
G
T
T
G
C
A
C
A
T
C
T
A
T
G
C
G
T
T
T
4
T
G
G
C
T
T
A
A
G
C
T
T
G
T
G
T
T
C
C
T
4
6
5
T
A
2
T
T
2
A
C
A
T
C
T
G
C
G
G
C
C
T
G
G
T
T
C
A
2
A
C
T
A
  39,308,957
  39,309,008
  39,309,361
  39,309,364
  39,312,424
  39,312,483
  39,312,503
  39,312,508
  39,312,948
  39,312,965
  39,313,129
  39,313,204
  39,313,393
  39,313,486
  39,314,215
  39,314,272
  39,314,273
  39,314,289
  39,314,367
  39,314,530
  39,314,723
  39,314,829
  39,314,891
  39,314,986
  39,315,445
  39,315,553
  39,315,576
  39,315,670
  39,316,043
  39,316,135
  39,316,273
  39,316,409
  39,316,423
  39,316,777
  39,316,782
  39,316,784
  39,316,855
  39,316,860
  39,316,862
  39,316,864
  39,316,866
  39,317,141
  39,317,343
  39,317,428
  39,317,438
  39,317,526
  39,317,611
  39,318,218
  39,318,238
  39,318,265
  39,318,354
  39,318,358
  39,318,459
  39,318,725
  39,318,839
  39,318,851
  39,318,853
  39,318,855
  39,318,857
  39,318,859
  39,318,872
  39,318,882
  39,318,899
  39,318,956
  39,319,099
  39,319,485
  39,319,594
  39,319,981
  39,320,155
  39,320,206
  39,320,236
  39,320,301
  39,320,395
  39,320,655
  39,320,661
  39,320,729
  39,320,914
  39,321,107
  39,321,141
  39,321,236
  39,321,479
  39,321,503
  39,321,664
  39,321,676
  39,321,801
  39,322,058
  39,322,328
  39,322,356
  39,322,520
  39,322,586
  39,322,604
  39,322,630
  39,322,722
  39,322,727
  39,322,771
  39,323,101
  39,323,174
  39,323,238
  39,323,273
  39,323,390
  39,323,391
  39,323,510
  39,323,634
  39,323,678
  39,323,679
  39,323,836
  39,323,854
  39,323,882
  39,324,021
  39,324,395
  39,324,479
  39,325,085
  39,325,112
  39,325,337
  39,325,418
  39,325,576
  39,325,930
  39,326,015
  39,326,509
  39,327,286
  39,328,453
  39,329,950
  39,331,426
  39,334,815
  39,335,663
  39,335,779
  39,335,792
  39,335,821
  39,335,843
  39,336,169
  39,336,445
  39,336,582
  39,336,692
  39,336,757
  39,336,788
  39,337,526
  39,337,624
  39,337,830
  39,338,394
  39,338,738
  39,338,753
  39,338,759
  39,338,771
  39,338,781
  39,338,785
  39,338,793
  39,338,824
  39,338,842
  39,338,844
  39,338,855
  39,338,864
  39,339,326
  39,339,372
  39,339,435
  39,339,523
  39,339,563
  39,340,092
  39,340,515
  39,340,601
  39,340,621
  39,340,633
  39,340,639
  39,340,683
  39,341,148
  39,341,149
  39,341,235
  39,341,901
  39,342,377
  39,342,531
  39,343,919
  39,348,583
  39,350,243
  39,351,410
  39,351,887
T
A
-
-
-
C/A
C/T
C/T
G
-
T
-
A/TA
-
T
A
A
A
T
T/G
C
G
C
C
G
-
-
G
A
A
T
-
A
A
2
G/2
A
2
11
G/2
G/2
C
G
A
T
-
-
28
G
A
C
C
A
T
G
G
A/G
A/G
A/G
A/G
12/-
2/-
A
A
T
T
3
A
G
C
A
C
A
G
G
C
G
G
T
A
G
G
C
T
C
A
-
2
G
T
A
T/C
A
C
G
-
T
A
11
T
2
T
-
2
2
-
G
2
G
G
T
4
G
C
T
T
A
A
5/3
-
-
3/TC
-
A
T
2
TC/3
G
C/T
A
T
C
A
T
C
A
C
C
T
C/3
T/C
-
-
5/-
-/TG
G
2/-
T/A
T/A
-
3
A
-
4
5
T/C
A
T
G/T
G/C
C/G
C/G
G
A
A
T/2
C
A
T
-
2
T
T/-
9/T