Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
  Home     Edit Strains     Edit Gene List     Sequence Annotation
 Assembly Rnor_5.0
   

Chromosome Start Position Stop Position
Region Size: 624,365 (bp)   Positions: 173
Conservation 
Genes ( + ) 
Genes ( + ) 
Genes ( - ) 
Rnor 5.0  
IS/Kyo (KyushuU) 
.0
.069
.002
.0
.0
.016
.184
.129
.991
.993
.106
.214
.026
.001
.208
.001
.006
.514
.994
.989
.784
.979
.744
.863
.44
.0
1.0
.033
.006
.262
.887
.982
.609
.999
.997
.954
.007
.069
.082
.991
.09
.866
.858
.001
.477
.015
.001
1.0
.099
.428
.993
.027
.018
.0
.997
.999
.998
.447
.0
.994
1.0
.435
.256
.58
.913
.573
.537
.674
1.0
.004
.027
1.0
.999
.102
.824
.018
.833
.966
.947
.098
.105
.998
.153
.025
.0
.99
.992
.968
.916
.915
.559
.555
.497
.006
.994
.869
.009
.749
.004
.927
.896
.948
.002
1.0
.999
.744
.969
.862
.989
.916
.068
.998
.137
.999
.6
.118
.021
.671
.68
.275
.161
.222
.005
1.0
.998
.998
.983
1.0
.007
.05
.996
.998
.997
.14
1.0
.998
.005
.009
.729
.939
.944
.937
.0
.996
.0
.006
.05
.109
.008
.833
.929
.663
.026
.092
.006
.91
.038
.986
.999
.442
.248
.041
.01
.964
.252
.093
.003
.034
.963
.118
.017
.995
.996
Cdh13
Cdh13
Cdh13
Cdh13
Cdh13
Cdh13
Cdh13
Cdh13
Cdh13
Cdh13
Cdh13
Cdh13
Cdh13
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
A
T
A
G
T
G
A
G
T
A
T
T
A
A
A
T
G
A
A
G
C
T
C
C
C
A
C
C
A
A
G
C
C
G
C
C
C
C
T
T
A
C
G
T
C
T
C
T
C
T
A
A
A
T
A
C
T
A
G
G
A
G
C
A
T
C
C
C
T
C
G
A
G
C
T
G
A
T
C
T
A
T
C
C
G
C
C
A
T
G
2
G
G
C
A
T
T
T
T
T
C
C
C
C
C
C
C
G
T
T
G
C
G
T
A
A
A
A
G
C
A
A
T
A
C
A
C
G
C
A
C
C
2
G
A
C
G
G
A
A
A
G
G
T
A
A
C
A
G
T
A
T
C
G
T
G
T
G
C
C
C
C
C
C
C
G
T
A
T
T
A
A
T
  61,625,246
  61,625,371
  61,625,405
  61,625,419
  61,625,759
  61,625,775
  61,627,722
  61,627,743
  61,630,047
  61,630,065
  61,630,079
  61,630,086
  61,630,106
  61,641,921
  61,646,516
  61,652,873
  61,661,351
  61,661,372
  61,661,493
  61,661,507
  61,661,718
  61,662,102
  61,665,079
  61,665,166
  61,665,228
  61,668,919
  61,669,128
  61,676,839
  61,681,730
  61,702,703
  61,702,735
  61,702,751
  61,713,595
  61,713,667
  61,713,703
  61,713,729
  61,716,706
  61,716,745
  61,716,746
  61,716,799
  61,740,759
  61,740,834
  61,740,875
  61,743,737
  61,751,387
  61,765,049
  61,765,119
  61,765,282
  61,770,676
  61,773,440
  61,773,470
  61,777,586
  61,778,588
  61,782,096
  61,782,142
  61,795,841
  61,810,867
  61,815,977
  61,819,572
  61,819,621
  61,824,946
  61,825,835
  61,841,120
  61,841,245
  61,845,066
  61,845,158
  61,845,159
  61,845,164
  61,845,231
  61,845,339
  61,847,231
  61,847,405
  61,850,837
  61,850,865
  61,850,927
  61,850,977
  61,851,070
  61,852,341
  61,852,350
  61,900,907
  61,900,947
  61,901,087
  61,901,107
  61,901,135
  61,901,154
  61,913,819
  61,927,095
  61,959,259
  61,977,991
  61,983,350
  61,983,490
  61,983,492
  61,983,495
  61,984,991
  61,987,294
  61,987,736
  61,987,742
  61,987,961
  61,994,114
  61,994,214
  61,994,240
  62,049,676
  62,049,751
  62,050,054
  62,050,480
  62,050,505
  62,050,696
  62,058,573
  62,062,094
  62,077,065
  62,088,371
  62,088,490
  62,132,808
  62,132,849
  62,132,868
  62,132,873
  62,132,874
  62,192,067
  62,201,395
  62,201,417
  62,201,599
  62,201,603
  62,218,496
  62,218,686
  62,224,758
  62,224,760
  62,224,799
  62,224,830
  62,224,896
  62,232,630
  62,351,259
  62,376,966
  62,413,504
  62,418,795
  62,423,039
  62,423,134
  62,425,211
  62,425,474
  62,438,249
  62,478,211
  62,478,212
  62,487,489
  62,490,483
  62,494,564
  62,525,789
  62,573,315
  62,574,358
  62,574,359
  62,574,839
  62,582,317
  62,607,113
  62,607,253
  62,608,849
  62,617,314
  62,627,591
  62,627,987
  62,632,507
  62,632,761
  62,640,910
  62,651,017
  62,656,262
  62,668,603
  62,668,633
  62,668,722
  62,668,811
  62,668,816
  62,672,001
  62,687,475
  62,712,607
  62,719,421
  62,719,475
  62,720,053
  62,720,108
A/G
T/G
A/G
G/A
T/C
G/A
A/G
G/A
T/C
A/C
T/C
T/C
A/C
A/G
A/G
T/C
G/A
A/C
A/G
G/A
C/2
T/C
C/T
C/T
C/A
A/G
C/T
C/A
A/G
A/G
G/A
C/T
C/A
G/A
C/T
C/A
C/A
C/T
T/G
T/A
A/G
C/A
G/T
T/C
C/-
T/C
C/T
T/C
C/2
T/G
A/T
A/G
A/G
T/C
A/G
C/T
T/C
A/G
G/C
G/A
A/3
G/A
C/A
A/G
T/C
C/G
C/T
C/2
T/C
C/T
G/A
A/G
G/A
C/A
T/C
G/A
A/G
T/C
C/A
T/C
A/C
T/A
C/T
C/A
G/A
C/T
C/6
A/G
T/-
G/A
2/-
G/A
G/T
C/A
A/C
T/C
T/C
T/C
T/C
T/3
C/T
C/-
C/-
C/T
C/T
C/G
C/T
G/A
T/A
T/C
G/A
C/-
G/A
T/-
A/G
A/G
A/C
A/-
G/A
C/T
A/G
A/T
T/C
A/G
C/T
A/C
C/T
G/A
C/G
A/T
C/T
C/A
2/-
G/A
A/G
C/T
G/A
G/C
A/G
A/C
A/C
G/A
G/A
T/-
A/C
A/4
C/T
A/G
G/A
T/C
A/G
T/G
C/T
G/A
T/C
G/3
T/2
G/A
C/A
C/T
C/T
C/T
C/T
C/T
C/G
G/A
T/C
A/G
T/C
T/G
A/G
A/G
T/C