Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
  Home     Edit Strains     Edit Gene List     Sequence Annotation
 Assembly Rnor_5.0
   

Chromosome Start Position Stop Position
Region Size: 24,661 (bp)   Positions: 163
Conservation 
Genes ( + ) 
Genes ( - ) 
Rnor 5.0  
F344/NCrl (KNAW) 
.001
.015
.007
.131
.121
.109
.093
.073
.001
.694
.015
.005
.003
.002
.002
.002
.02
.049
.233
.078
.003
.023
.006
.446
.002
.005
.011
.011
.043
.001
.004
.0
.003
.002
.001
.001
.984
.995
.0
.005
.004
.121
.429
.779
.145
.007
.079
.075
.013
.003
.004
.0
.0
.004
.007
.001
.011
.067
.995
.355
.393
.009
.187
.109
.001
.0
.015
.002
.002
.005
.013
.002
.002
.001
.0
.001
.013
.027
.001
.002
.333
.033
.001
.046
.001
.006
.001
.003
.0
.0
.075
.121
.148
.135
.005
.001
.014
.0
.004
.0
.001
.0
.002
.002
.003
.017
.021
.011
.012
.018
.065
.01
.001
.168
.001
.006
.001
.006
.02
.001
.001
.013
.001
--
--
--
--
--
--
--
--
.0
.003
.998
.003
.003
.002
.002
.001
.002
.0
.656
1.0
.004
.002
.918
--
--
--
--
--
.985
.425
.001
.071
.984
.013
.001
.002
.012
.0
.0
.055
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
Bmp3
Bmp3
Bmp3
Bmp3
Bmp3
Bmp3
Bmp3
Bmp3
Bmp3
Bmp3
Bmp3
Bmp3
Bmp3
Bmp3
Bmp3
Bmp3
Bmp3
G
3
29
A
A
A
A
A
G
A
C
G
T
C
C
G
A
A
A
4
2
A
A
C
T
G
T
C
T
A
G
G
C
C
C
A
A
C
G
T
C
A
8
2
T
A
G
C
G
T
T
A
C
C
T
G
T
T
G
G
A
G
T
G
G
C
C
G
C
T
C
C
T
C
4
A
G
6
C
C
C
T
T
T
C
G
T
A
G
T
T
A
T
C
C
T
A
A
A
G
C
C
C
C
A
C
A
G
C
T
C
T
G
T
A
G
G
A
G
C
G
2
C
T
C
C
C
T
A
T
A
T
T
T
A
G
G
G
A
T
G
C
5
A
4
T
G
A
18
18
A
3
A
C
T
G
G
C
A
T
T
A
C
  12,307,253
  12,307,267
  12,307,277
  12,307,324
  12,307,328
  12,307,332
  12,307,336
  12,307,340
  12,307,487
  12,307,898
  12,308,537
  12,308,748
  12,309,009
  12,309,552
  12,309,556
  12,310,035
  12,310,505
  12,311,040
  12,312,188
  12,312,196
  12,312,242
  12,312,718
  12,312,743
  12,314,173
  12,314,176
  12,314,779
  12,314,877
  12,315,014
  12,315,094
  12,315,163
  12,315,612
  12,315,878
  12,315,892
  12,316,387
  12,316,475
  12,317,092
  12,317,356
  12,317,393
  12,317,768
  12,319,388
  12,319,390
  12,319,617
  12,319,973
  12,319,979
  12,320,145
  12,320,524
  12,320,569
  12,320,612
  12,320,664
  12,320,679
  12,320,686
  12,320,771
  12,320,813
  12,320,836
  12,320,925
  12,321,134
  12,321,166
  12,321,330
  12,321,796
  12,322,063
  12,322,073
  12,322,325
  12,322,367
  12,322,371
  12,322,466
  12,322,551
  12,322,646
  12,322,842
  12,322,906
  12,322,912
  12,322,941
  12,322,957
  12,322,968
  12,323,032
  12,323,132
  12,323,232
  12,323,242
  12,323,269
  12,323,374
  12,323,485
  12,323,619
  12,323,753
  12,323,795
  12,323,856
  12,323,909
  12,323,940
  12,324,000
  12,324,018
  12,324,041
  12,324,043
  12,324,058
  12,324,064
  12,324,068
  12,324,070
  12,324,081
  12,324,093
  12,324,120
  12,324,133
  12,324,139
  12,324,144
  12,324,156
  12,324,194
  12,324,196
  12,324,197
  12,324,198
  12,324,209
  12,324,212
  12,324,284
  12,324,303
  12,324,342
  12,324,427
  12,324,487
  12,324,553
  12,324,638
  12,324,690
  12,324,852
  12,324,948
  12,324,953
  12,324,978
  12,325,077
  12,325,078
  12,325,243
  12,325,289
  12,325,499
  12,325,505
  12,325,514
  12,325,530
  12,325,596
  12,325,825
  12,325,827
  12,325,828
  12,326,127
  12,326,373
  12,326,439
  12,326,708
  12,326,735
  12,326,738
  12,326,753
  12,326,778
  12,327,029
  12,327,094
  12,327,136
  12,327,508
  12,327,660
  12,327,695
  12,328,032
  12,328,113
  12,328,117
  12,328,133
  12,328,184
  12,328,220
  12,328,415
  12,328,427
  12,328,632
  12,329,242
  12,329,421
  12,329,684
  12,329,760
  12,330,038
  12,330,158
  12,330,439
  12,330,489
  12,330,978
A
-
-
G
G
G
G
G
A
33
2
A
C
T
T
A
G
-
C
-
-
2
G
T
C
A
2
5
13
-
A
A
G
T
T
G
G
T
T
G
A
G
8/-
2/-
C
G
A
T
A
C
C
G
T
-
-
2
C
C
2
T
-
A
A
C
G/-
G
T
C
T
-
A
T
G
T
-
G
6
6/-
T
4
T
C
G
C
T
T
C
C
2
10
C
G
C
T
A
C
G
T
T
C
G
T
T
G
2
A
C
A
T
A
T
31/33
C
G
G
A
A
G
C
T
A
-
T
C
T
T
T
C
C
C
7
C
T/3
C
T
4
16
A
G
A
T
T
-
G
-
C
2
2
-
-
G
-
G
T
C
3
C
G
G
C
C
C
T