Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
  Home     Edit Strains     Edit Gene List     Sequence Annotation
 Assembly Rnor_5.0
   

Chromosome Start Position Stop Position
Region Size: 41,879 (bp)   Positions: 209
Conservation 
Genes ( + ) 
Genes ( - ) 
Rnor 5.0  
F344/NHsd (KNAW) 
.0
.001
.005
.034
.0
.0
.005
.001
.0
.007
.181
.006
.001
.002
.0
.003
.001
.0
.002
--
.002
.001
.001
.0
.001
.004
.163
.007
.001
.004
.001
.868
.011
.023
.001
.0
.0
.291
.006
.011
.006
.007
.0
.001
.002
.026
.209
.17
.14
.044
.132
.118
.221
.214
.011
.015
.206
.332
--
--
.003
.006
.006
.015
.008
.082
.005
.002
.321
.673
.003
--
.2
.311
.042
.573
.007
.003
.103
.573
.119
.24
.025
--
--
.002
.019
.008
.006
.002
.0
.003
.002
.0
.003
.219
.183
.084
.003
.101
.366
.004
.009
.018
.028
.004
--
.037
.005
.059
.257
.04
.01
.001
.005
.003
.001
.025
.016
.017
.002
.0
.641
.012
.0
.043
.04
.176
.02
.013
.0
.001
.012
.05
.0
.003
.001
.0
.008
.0
.0
.002
.001
.001
.007
.037
.165
.087
.059
.046
.047
.041
.032
.09
.039
.0
.015
--
--
--
--
--
--
--
--
--
--
--
.038
.025
.147
.0
.0
--
--
--
--
--
.289
.051
.071
.003
.006
.004
.0
.002
.042
.002
.001
.0
.0
.162
.002
.0
.297
.0
.001
.003
.001
.952
.022
.191
.054
.016
.016
.047
.256
.024
.001
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
Bdh1
Bdh1
Bdh1
Bdh1
Bdh1
Bdh1
Bdh1
Bdh1
Bdh1
Bdh1
Bdh1
Bdh1
Bdh1
Bdh1
Bdh1
Bdh1
Bdh1
Bdh1
Bdh1
Bdh1
Bdh1
C
T
C
C
A
C
C
C
G
C
A
C
2
T
C
A
T
T
A
T
A
A
T
T
G
A
A
15
C
G
C
38
C
G
T
G
C
C
T
A
T
A
T
T
C
C
8
G
G
T
G
T
C
G
C
C
A
A
C
C
C
A
A
G
C
4
T
G
T
G
T
C
A
A
T
4
A
C
C
T
A
A
A
A
G
T
G
T
2
G
T
A
A
C
T
G
C
T
T
C
A
T
T
C
T
16
C
T
A
C
C
G
40
T
G
T
C
C
T
C
A
C
G
G
A
A
10
G
A
C
10
C
G
C
C
C
C
T
G
G
G
G
A
A
3
T
G
C
A
G
T
C
3
C
13
A
C
A
C
T
T
G
C
A
A
C
G
C
C
A
T
A
C
C
G
C
G
T
A
T
T
A
A
C
T
C
G
T
A
T
G
A
G
T
3
C
G
A
C
A
6
T
T
72
68
G
A
C
A
  75,652,531
  75,653,021
  75,653,038
  75,653,429
  75,653,579
  75,653,596
  75,654,337
  75,654,689
  75,654,923
  75,655,239
  75,655,605
  75,656,040
  75,656,097
  75,656,189
  75,656,842
  75,656,859
  75,656,899
  75,657,713
  75,657,742
  75,658,090
  75,658,386
  75,658,756
  75,658,963
  75,658,967
  75,659,325
  75,659,663
  75,659,795
  75,659,834
  75,661,516
  75,662,169
  75,662,411
  75,662,531
  75,662,618
  75,662,760
  75,662,964
  75,663,167
  75,663,235
  75,663,339
  75,663,541
  75,663,729
  75,663,934
  75,663,996
  75,664,253
  75,664,398
  75,664,964
  75,665,449
  75,665,610
  75,665,946
  75,666,679
  75,666,763
  75,666,891
  75,667,490
  75,667,602
  75,667,758
  75,667,835
  75,667,836
  75,667,983
  75,668,002
  75,668,574
  75,668,599
  75,668,748
  75,668,965
  75,669,552
  75,669,767
  75,669,769
  75,669,789
  75,669,808
  75,669,828
  75,670,049
  75,670,078
  75,670,183
  75,670,520
  75,670,597
  75,670,656
  75,670,715
  75,670,860
  75,670,919
  75,670,929
  75,670,994
  75,671,267
  75,671,289
  75,671,295
  75,671,468
  75,671,610
  75,671,697
  75,672,051
  75,672,099
  75,672,657
  75,672,690
  75,672,749
  75,672,808
  75,673,003
  75,673,366
  75,673,532
  75,673,538
  75,673,570
  75,673,579
  75,673,819
  75,674,236
  75,674,306
  75,674,673
  75,674,776
  75,674,785
  75,674,808
  75,674,919
  75,675,109
  75,675,253
  75,675,389
  75,681,577
  75,681,604
  75,681,910
  75,682,082
  75,682,323
  75,682,420
  75,682,422
  75,682,449
  75,682,546
  75,682,561
  75,682,579
  75,682,580
  75,682,663
  75,682,744
  75,682,795
  75,683,190
  75,683,531
  75,684,009
  75,684,207
  75,684,245
  75,684,280
  75,684,319
  75,684,366
  75,684,545
  75,684,550
  75,684,684
  75,684,833
  75,684,839
  75,684,927
  75,684,950
  75,685,020
  75,685,173
  75,685,229
  75,685,265
  75,685,283
  75,685,314
  75,685,320
  75,685,432
  75,685,639
  75,685,644
  75,685,646
  75,685,654
  75,685,656
  75,685,659
  75,685,661
  75,685,671
  75,685,707
  75,685,730
  75,685,736
  75,685,754
  75,685,771
  75,685,774
  75,685,781
  75,685,788
  75,685,802
  75,685,804
  75,685,809
  75,685,852
  75,685,891
  75,685,896
  75,685,950
  75,685,955
  75,686,009
  75,686,016
  75,686,018
  75,686,244
  75,686,254
  75,686,332
  75,686,338
  75,686,343
  75,686,395
  75,686,435
  75,686,581
  75,687,269
  75,687,293
  75,687,470
  75,687,739
  75,687,787
  75,687,797
  75,687,828
  75,688,293
  75,688,383
  75,688,515
  75,688,688
  75,689,119
  75,689,212
  75,689,359
  75,689,544
  75,689,605
  75,690,123
  75,690,532
  75,690,906
  75,691,918
  75,692,116
  75,692,347
  75,692,421
  75,692,425
  75,692,657
  75,692,971
  75,693,330
  75,693,348
T
C
T
T
G
T
T
T
C
T
G
T
-
C
2
G
C
-
C
-
T
G
C
G
A
G
G
-
A
A
T
-
A
A
G
A
G
T
C
G
C
G
A
C
T
A
-
A
G/25
C
T
-
T
A
A
G
G
G
T
T
A
G
G
C
A
-
A
A
C
A
C
17
G
G
C
-
G
T
T
C
G
G
G
G
4/6
C
C
C
-
C
C
G
G
6
C
16
T
C
C
T
C
C
C
-
C
16/-
T
C
G
2
2
A
-
G
T
A
A
T
C
T
C
T
A
C
G
G
-
-
G
T
-
T
A
T
G
T
T
C
A
4
A
2
G
-
-
-
A
T
G
2
7
2
-
T
-
G
T
T
T
C
2
A
T
G
G
T
A
T
2
T
A
2
T
T
A
A
C
C
G
C
G
G
G
T
G
T
A
C
G
C
A
G
A
A
-
T
A
C
6
-
-
-
C
72/-
-
A
-
2
G