Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
  Home     Edit Strains     Edit Gene List     Sequence Annotation
 Assembly Rnor_5.0
   

Chromosome Start Position Stop Position
Region Size: 36,303 (bp)   Positions: 125
Conservation 
Genes ( + ) 
Genes ( - ) 
Rnor 5.0  
F344/NRrrc (SOLiD) (KNAW) 
.001
1.0
.0
.066
.004
.709
.084
.515
.136
.051
.78
.021
.028
.235
.002
.024
.025
.106
.187
.011
.043
.002
.006
.013
.095
.106
.013
.002
.006
--
--
--
.259
.016
.079
.021
.053
.032
.075
.015
.024
.102
.161
.01
.013
.01
.192
.003
.003
.127
.468
.391
.073
.153
.185
.06
.016
.081
.05
.173
.021
.025
--
--
--
--
--
.013
.009
.093
.279
.011
.0
.136
.004
.02
.737
.09
--
.644
.162
.034
.999
.0
.002
.013
.002
.061
--
.004
.001
.001
.16
.008
1.0
--
--
--
.035
.119
.264
.014
.999
.956
.164
.19
.028
.002
--
.091
.003
--
--
--
--
.171
--
.001
.016
.849
.864
.004
.001
.993
.991
Agfg2
Agfg2
Agfg2
Agfg2
Agfg2
Agfg2
Agfg2
Agfg2
Agfg2
Agfg2
Agfg2
Agfg2
Agfg2
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
T
G
A
A
C
A
G
G
G
G
T
G
5
G
A
G
T
G
G
A
T
T
G
T
C
A
G
T
A
T
G
A
G
G
T
A
C
A
T
A
A
T
A
A
T
T
A
T
A
G
T
C
G
G
A
C
C
G
G
C
34
G
T
T
G
A
G
G
A
A
C
A
A
G
C
C
A
A
A
G
A
C
C
A
A
C
A
T
2
G
G
C
A
A
A
G
G
T
T
G
211
G
16
C
C
C
G
2
C
A
C
T
A
135
G
A
C
C
T
G
A
C
G
A
4
  24,099,350
  24,099,584
  24,099,776
  24,099,836
  24,099,866
  24,100,158
  24,100,183
  24,100,663
  24,100,808
  24,100,855
  24,100,970
  24,101,178
  24,101,180
  24,101,340
  24,101,476
  24,101,584
  24,101,586
  24,101,666
  24,101,669
  24,101,738
  24,101,789
  24,101,882
  24,101,885
  24,101,886
  24,101,905
  24,101,919
  24,101,934
  24,101,952
  24,101,954
  24,102,264
  24,102,334
  24,102,407
  24,102,642
  24,102,692
  24,102,905
  24,102,935
  24,102,973
  24,102,999
  24,103,185
  24,103,203
  24,103,212
  24,103,231
  24,103,247
  24,103,337
  24,103,340
  24,103,392
  24,103,625
  24,103,830
  24,103,896
  24,104,214
  24,104,236
  24,104,246
  24,104,262
  24,104,288
  24,104,354
  24,104,488
  24,104,501
  24,104,595
  24,104,766
  24,104,783
  24,104,820
  24,105,044
  24,105,167
  24,105,228
  24,105,231
  24,105,313
  24,105,350
  24,105,944
  24,107,103
  24,107,195
  24,107,547
  24,107,798
  24,108,222
  24,108,590
  24,108,844
  24,108,855
  24,109,678
  24,110,418
  24,110,802
  24,111,109
  24,111,148
  24,111,235
  24,112,122
  24,112,709
  24,113,094
  24,113,116
  24,114,551
  24,116,165
  24,116,234
  24,116,423
  24,116,434
  24,116,552
  24,116,572
  24,116,601
  24,116,738
  24,117,497
  24,117,560
  24,117,792
  24,118,219
  24,119,215
  24,119,406
  24,121,487
  24,121,518
  24,121,949
  24,122,761
  24,122,764
  24,123,680
  24,129,467
  24,129,657
  24,129,947
  24,130,202
  24,131,225
  24,131,236
  24,131,955
  24,132,772
  24,132,909
  24,132,949
  24,133,353
  24,133,655
  24,134,409
  24,134,410
  24,134,565
  24,134,579
  24,135,047
  24,135,051
C
G/A
G
G
A
17
A
A
A
A
2
A
-
A
G
A
G
T
A
G
2
C
A
C
T
G
C
C
G
C
G/T
A/G
G/T
A
5
5
T
C
C
G
G
A
G
G
C
C
G
C
G
A
C
-
C
A
T
A
G
T
A
T
-
A
A
G
C
G
A
A
C
G
T
G
T
6
G
T
G
3
5
A
A/G
T
C/A
G
C
T
C
-
-
A
A
T
2
G
G
G/A
A
C
A
A
211/-
G/A
16/-
T
C/2
C/A
A
2/-
5
G
T
C
C
135/-
G/2
2
C/2
T
C
T
G
C/T
G/A
T
-