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  Home     Edit Strains     Edit Gene List     Sequence Annotation
 Assembly RGSC_v3.4
   

Chromosome Start Position Stop Position
Region Size: 402,264 (bp)   Positions: 542
Conservation 
Genes ( + ) 
Genes ( - ) 
Rnor 5.0  
--
--
--
.007
.065
.001
.004
.001
.285
.031
.001
.004
.057
.109
.058
.126
.007
.026
.056
.084
.086
.545
.005
.001
.004
.999
.004
.059
.051
.524
.001
.003
.15
.016
.004
.0
.998
.706
.001
.155
.244
.576
.008
--
.002
.999
.003
.007
.001
.106
.01
.018
.031
--
.011
.004
.99
--
--
.088
.004
.036
.39
--
--
.081
.079
.669
.01
.078
.03
.009
.003
.008
.41
.101
.049
.037
.065
.006
.031
--
.533
.005
.003
.064
.001
.243
.063
.067
.092
.106
.008
.245
.316
.366
--
--
--
--
--
--
.006
.018
.319
.312
.013
.012
.001
.004
--
--
.023
.888
1.0
.953
.08
.042
.77
.001
.097
.011
.0
.704
.551
.011
.001
.001
.895
1.0
.913
.023
.005
.001
.011
.09
.993
.005
.016
.022
.017
.027
.031
.121
.034
.071
.917
.011
.022
.006
.503
.031
.023
.003
.092
.232
.005
.031
.008
.0
.018
.008
.774
.002
.006
.037
.037
.038
.123
.001
.013
.009
.238
.039
.247
.001
.101
.028
.223
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
.482
.281
.002
.001
.001
.012
.01
.002
.002
.016
.001
.002
.286
.992
.0
.001
--
.07
.999
.001
.0
.097
.049
.0
.0
.003
.046
.088
--
--
.544
.039
.018
--
--
--
--
.075
.003
.137
--
--
.016
.0
.0
.002
.083
.04
.005
.316
.0
.998
.003
.587
.616
.0
.006
.0
.103
--
.02
.004
.003
.0
.003
--
--
--
.069
.0
.003
.003
.744
.956
--
--
.003
.267
.373
.026
.007
.002
.006
.041
1.0
.999
.946
.245
.001
.044
.047
.055
.112
.136
.106
.001
.045
.088
.008
.626
.001
.0
--
1.0
.994
.895
.614
--
.007
.121
.006
.003
.007
.001
.345
--
--
--
.003
.023
.016
.006
.004
.003
.002
.056
.074
--
.003
.003
.974
--
.0
.049
.28
.024
.019
.053
.024
.002
--
.135
.008
.016
.019
.008
.032
.049
--
.005
.057
.008
.201
.016
--
.015
.005
.002
.998
.01
.09
.005
.005
.026
.019
.004
--
.394
.006
.0
.011
.026
.439
--
.002
.002
.002
.002
.034
.004
.013
--
--
--
--
.942
.002
.005
.001
.0
.069
.0
.002
.003
.008
.027
.126
.003
.12
.013
.116
.001
--
.019
--
.002
--
.049
.018
.013
.0
.588
--
.068
--
--
.102
.082
.045
.004
.001
.583
.007
.053
.004
.064
.012
.029
.004
.01
.024
.119
--
--
--
.002
.002
.5
--
.338
.008
--
.144
.359
.003
.03
.012
.017
.001
.033
.004
.061
.052
.095
.112
.03
.071
.04
.145
.126
--
--
.055
.009
.006
.074
.044
.019
.755
.243
.002
.169
.016
.003
.08
.07
.002
.402
.406
.041
.002
.99
.013
.022
.0
.078
.011
.071
.005
.015
.005
.0
.006
.001
.001
.0
.47
.212
.082
.004
.127
.004
.002
--
.61
.032
.302
.03
.05
.01
.003
.299
.035
.416
.006
--
.181
.272
.089
.001
.035
.019
--
--
.019
.007
--
.006
.082
.001
.095
.096
--
.002
.918
.001
--
.163
.122
.129
.171
.382
.043
.005
--
--
--
--
--
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--
--
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--
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--
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--
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--
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--
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--
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--
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--
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--
--
--
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--
--
--
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--
--
--
Adk
Adk
Adk
Adk
Adk
Adk
Adk
Adk
Adk
Adk
Adk
Adk
Adk
Adk
Adk
Adk
Adk
Adk
Adk
Adk
Adk
Adk
Adk
Adk
Adk
Adk
Adk
Adk
Adk
Adk
Adk
Adk
Adk
Adk
Adk
Adk
Adk
Adk
Adk
Adk
Adk
Adk
Adk
Adk
Adk
Adk
Adk
Adk
Adk
Adk
Adk
Adk
Adk
Adk
Adk
C
C
C
C
C
T
C
G
C
4
G
T
A
A
A
T
2
4
T
T
T
T
T
A
A
T
C
T
A
T
G
C
C
T
T
T
T
A
G
T
G
C
C
C
C
A
A
T
A
20
T
T
G
G
G
T
A
24
18
T
A
T
G
T
G
T
G
G
C
A
T
C
A
T
C
A
C
T
C
A
A
C
T
A
T
T
G
G
C
A
C
T
C
C
C
A
A
C
T
A
A
C
C
A
T
C
A
8
C
T
C
T
C
T
A
T
T
G
4
C
4
A
A
T
6
T
A
T
G
A
G
C
C
T
T
G
A
T
A
A
T
A
T
T
T
G
C
T
C
T
C
A
C
C
G
10
C
C
G
C
G
T
C
A
A
3
T
A
A
C
T
C
C
C
A
C
A
T
T
G
G
T
T
T
T
T
A
T
T
A
C
C
G
A
C
G
A
C
T
A
A
T
C
T
C
A
G
T
G
G
A
A
C
A
T
C
G
A
G
T
C
C
T
A
A
T
G
A
A
T
C
A
A
T
T
C
T
C
2
A
A
A
2
8
A
T
G
T
C
G
G
9
G
T
A
C
T
A
G
A
A
T
C
C
A
G
A
C
G
A
2
G
G
G
A
G
T
T
A
9
G
C
G
G
T
T
A
A
G
C
T
G
T
G
G
C
T
C
2
G
A
T
T
T
A
T
C
A
G
3
G
C
G
T
2
A
T
T
G
T
A
T
A
G
A
C
T
G
T
A
G
T
23
A
A
C
2
A
A
T
G
C
A
A
C
A
G
G
A
T
A
2
A
A
A
A
T
C
A
A
C
C
A
A
2
T
C
C
A
G
T
A
G
T
T
G
C
C
T
A
G
C
T
G
3
C
8
T
T
T
A
G
A
C
A
T
10
A
T
G
A
15
G
C
T
G
T
A
4
T
T
A
2
G
G
G
C
T
A
C
C
A
A
T
A
G
C
C
T
G
G
16
G
C
G
A
2
T
G
T
A
C
A
A
T
2
A
T
12
C
G
A
G
G
G
G
T
G
A
A
T
T
T
C
T
G
C
T
C
A
G
A
C
C
G
C
C
G
G
G
A
C
G
T
G
G
C
A
A
T
A
A
G
T
A
C
C
A
C
A
T
C
T
G
G
T
G
T
A
T
T
G
A
A
A
11
T
A
G
G
G
C
T
C
G
T
C
T
A
C
C
G
A
T
C
G
C
T
A
T
C
C
  3,015,071
  3,015,072
  3,015,078
  3,015,393
  3,015,432
  3,015,458
  3,015,471
  3,015,479
  3,017,536
  3,017,863
  3,018,033
  3,018,834
  3,020,685
  3,021,064
  3,021,086
  3,022,077
  3,022,506
  3,022,509
  3,022,515
  3,022,526
  3,022,529
  3,022,721
  3,023,521
  3,023,921
  3,025,211
  3,025,254
  3,027,870
  3,028,872
  3,029,119
  3,030,783
  3,031,093
  3,031,115
  3,031,321
  3,031,660
  3,032,256
  3,033,539
  3,034,754
  3,036,243
  3,037,495
  3,040,078
  3,040,497
  3,040,528
  3,040,645
  3,041,158
  3,041,492
  3,044,610
  3,044,910
  3,045,128
  3,045,190
  3,045,273
  3,047,983
  3,048,249
  3,048,314
  3,049,396
  3,050,781
  3,056,016
  3,056,259
  3,057,709
  3,057,762
  3,057,889
  3,058,620
  3,058,762
  3,059,346
  3,060,869
  3,061,069
  3,061,553
  3,061,554
  3,062,860
  3,063,309
  3,063,420
  3,063,582
  3,064,593
  3,064,597
  3,065,473
  3,066,112
  3,066,392
  3,066,432
  3,066,465
  3,066,525
  3,066,941
  3,066,966
  3,067,182
  3,067,268
  3,067,669
  3,069,147
  3,070,173
  3,071,275
  3,071,557
  3,071,665
  3,071,666
  3,071,681
  3,071,718
  3,071,750
  3,071,819
  3,072,245
  3,072,250
  3,072,726
  3,073,011
  3,073,321
  3,073,342
  3,073,357
  3,073,431
  3,073,546
  3,073,578
  3,073,603
  3,073,604
  3,073,846
  3,074,361
  3,075,363
  3,075,543
  3,075,888
  3,076,631
  3,079,014
  3,082,206
  3,082,378
  3,082,413
  3,083,023
  3,083,270
  3,083,342
  3,083,577
  3,083,586
  3,083,603
  3,083,620
  3,083,934
  3,084,005
  3,084,176
  3,085,215
  3,085,222
  3,085,504
  3,085,816
  3,086,614
  3,090,870
  3,099,042
  3,100,561
  3,101,505
  3,104,600
  3,105,450
  3,106,873
  3,108,831
  3,109,042
  3,109,450
  3,110,672
  3,111,349
  3,111,749
  3,111,806
  3,112,079
  3,112,271
  3,112,975
  3,112,981
  3,113,175
  3,113,556
  3,115,089
  3,115,106
  3,115,169
  3,115,555
  3,115,657
  3,116,849
  3,116,897
  3,117,068
  3,117,255
  3,118,756
  3,119,070
  3,119,140
  3,120,366
  3,120,386
  3,120,650
  3,122,258
  3,122,307
  3,123,673
  3,125,255
  3,125,756
  3,125,870
  3,126,548
  3,127,186
  3,127,644
  3,127,906
  3,128,406
  3,129,930
  3,129,986
  3,130,446
  3,130,890
  3,131,328
  3,131,337
  3,131,341
  3,131,636
  3,131,656
  3,131,663
  3,131,671
  3,132,209
  3,132,526
  3,132,677
  3,132,679
  3,132,798
  3,132,801
  3,132,819
  3,132,942
  3,133,079
  3,133,472
  3,133,499
  3,133,562
  3,133,803
  3,133,975
  3,134,172
  3,134,214
  3,134,215
  3,134,451
  3,134,613
  3,134,626
  3,135,025
  3,135,102
  3,135,704
  3,135,762
  3,136,443
  3,136,537
  3,138,349
  3,140,341
  3,140,573
  3,141,094
  3,144,463
  3,144,734
  3,145,777
  3,146,799
  3,146,881
  3,146,990
  3,148,523
  3,149,785
  3,150,630
  3,151,053
  3,151,476
  3,151,877
  3,152,445
  3,153,064
  3,153,067
  3,153,123
  3,153,144
  3,155,065
  3,156,757
  3,157,009
  3,157,774
  3,157,775
  3,159,568
  3,163,591
  3,163,746
  3,164,043
  3,164,424
  3,164,433
  3,164,460
  3,165,466
  3,165,495
  3,165,610
  3,166,937
  3,166,994
  3,168,946
  3,169,511
  3,170,847
  3,171,989
  3,172,280
  3,173,287
  3,174,638
  3,175,627
  3,176,071
  3,177,282
  3,179,783
  3,180,658
  3,180,670
  3,180,857
  3,181,651
  3,181,760
  3,182,311
  3,183,227
  3,184,010
  3,184,410
  3,184,488
  3,184,847
  3,187,396
  3,187,946
  3,188,057
  3,190,760
  3,192,506
  3,194,411
  3,194,468
  3,195,619
  3,197,150
  3,197,207
  3,197,617
  3,197,824
  3,198,299
  3,198,305
  3,198,306
  3,198,308
  3,198,311
  3,198,313
  3,198,316
  3,199,574
  3,200,526
  3,201,299
  3,201,339
  3,201,794
  3,202,146
  3,202,189
  3,202,771
  3,204,045
  3,204,128
  3,204,161
  3,204,412
  3,206,900
  3,207,898
  3,208,063
  3,208,112
  3,208,331
  3,210,793
  3,211,409
  3,212,636
  3,212,929
  3,213,005
  3,213,073
  3,213,793
  3,213,883
  3,214,440
  3,216,857
  3,217,236
  3,217,439
  3,217,511
  3,218,903
  3,218,908
  3,219,288
  3,219,655
  3,220,522
  3,221,532
  3,221,978
  3,222,352
  3,223,861
  3,225,100
  3,226,941
  3,228,006
  3,229,158
  3,229,337
  3,229,898
  3,231,117
  3,232,719
  3,233,465
  3,234,844
  3,236,163
  3,238,847
  3,239,109
  3,239,573
  3,240,535
  3,243,728
  3,243,955
  3,244,643
  3,246,759
  3,246,838
  3,247,267
  3,248,252
  3,248,264
  3,248,384
  3,249,752
  3,250,538
  3,251,446
  3,251,885
  3,255,353
  3,256,549
  3,257,316
  3,258,691
  3,261,391
  3,263,726
  3,268,701
  3,270,335
  3,275,368
  3,286,020
  3,286,559
  3,288,783
  3,296,586
  3,296,667
  3,298,038
  3,298,039
  3,298,078
  3,298,487
  3,299,350
  3,299,983
  3,299,989
  3,301,541
  3,301,918
  3,303,230
  3,304,899
  3,305,477
  3,320,305
  3,320,401
  3,320,808
  3,321,361
  3,322,467
  3,323,123
  3,324,725
  3,327,965
  3,328,009
  3,329,177
  3,329,636
  3,330,678
  3,331,106
  3,332,514
  3,332,672
  3,336,778
  3,338,999
  3,339,650
  3,345,675
  3,356,501
  3,357,842
  3,358,400
  3,359,797
  3,360,294
  3,361,301
  3,361,441
  3,362,437
  3,362,440
  3,362,724
  3,363,448
  3,363,746
  3,364,278
  3,364,476
  3,365,130
  3,365,202
  3,365,632
  3,365,640
  3,365,936
  3,366,110
  3,366,336
  3,367,576
  3,367,863
  3,367,951
  3,368,094
  3,368,185
  3,368,475
  3,368,574
  3,368,865
  3,369,136
  3,369,390
  3,370,466
  3,370,991
  3,371,393
  3,373,443
  3,375,092
  3,375,525
  3,375,642
  3,375,702
  3,375,741
  3,375,759
  3,375,763
  3,375,779
  3,375,805
  3,376,150
  3,376,883
  3,377,667
  3,377,680
  3,378,209
  3,378,254
  3,378,311
  3,378,424
  3,378,754
  3,379,453
  3,379,511
  3,379,752
  3,380,212
  3,380,280
  3,381,286
  3,381,330
  3,381,628
  3,382,158
  3,382,245
  3,382,362
  3,382,711
  3,382,776
  3,382,829
  3,383,323
  3,383,325
  3,383,871
  3,384,192
  3,384,194
  3,384,752
  3,385,211
  3,385,431
  3,385,684
  3,385,824
  3,386,496
  3,386,569
  3,386,719
  3,387,270
  3,387,300
  3,387,312
  3,387,678
  3,387,695
  3,387,949
  3,389,745
  3,389,749
  3,389,753
  3,390,050
  3,390,142
  3,390,174
  3,390,200
  3,390,264
  3,390,416
  3,390,870
  3,390,971
  3,391,998
  3,392,445
  3,393,156
  3,393,626
  3,393,660
  3,394,158
  3,394,164
  3,394,188
  3,394,322
  3,394,426
  3,394,607
  3,394,679
  3,394,959
  3,395,013
  3,395,085
  3,395,149
  3,395,191
  3,395,408
  3,395,769
  3,395,812
  3,395,909
  3,395,996
  3,397,529
  3,398,138
  3,398,802
  3,399,141
  3,401,558
  3,402,218
  3,402,832
  3,404,623
  3,404,829
  3,405,841
  3,407,324
  3,410,042
  3,411,016
  3,411,018
  3,411,281
  3,412,627
  3,412,787
  3,413,346
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