Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
  Home     Edit Strains     Edit Gene List     Sequence Annotation
 Assembly mRatBN7.2
   

Chromosome Start Position Stop Position
Region Size: 167,602 (bp)   Positions: 356
Genes ( + ) 
Genes ( - ) 
Genes ( - ) 
mRatBN7.2  
ACI/N (2020) 
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
Ube3d
Ube3d
Ube3d
Ube3d
Ube3d
Ube3d
Ube3d
Ube3d
Ube3d
Ube3d
Ube3d
Ube3d
Ube3d
Ube3d
Ube3d
Ube3d
Ube3d
Ube3d
Ube3d
Ube3d
Ube3d
Ube3d
Ube3d
Ube3d
Ube3d
Ube3d
Ube3d
Ube3d
Ube3d
Ube3d
Ube3d
Ube3d
Ube3d
Ube3d
Ube3d
Ube3d
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
C
5
-
A
C
G
C
A
-
A
T
A
-
A
A
T
T
C
A
A
T
T
A
A
A
T
A
C
G
T
G
T
C
G
C
G
A
3
C
-
A
G
T
G
A
G
A
T
C
T
A
C
G
-
T
C
C
T
C
G
T
T
C
A
G
-
T
A
C
G
T
G
C
-
T
G
-
A
T
G
2
A
T
C
G
C
G
T
-
A
A
C
A
A
T
C
T
T
G
C
G
G
G
A
G
A
T
T
-
C
C
G
C
G
A
G
T
T
T
18
T
C
G
C
G
A
C
C
G
T
A
A
-
T
A
A
C
C
A
C
G
G
C
A
G
C
G
A
T
G
A
A
G
T
C
T
C
C
T
C
T
A
C
C
C
A
G
G
G
-
A
3
T
-
T
A
A
C
-
G
C
G
-
T
A
-
G
G
A
A
G
G
G
A
G
C
A
C
T
T
T
T
C
G
G
G
C
C
-
C
G
C
G
T
G
C
A
C
C
G
A
G
T
T
T
G
-
C
A
G
G
T
T
A
T
C
G
C
G
G
G
G
T
G
G
52
A
-
4
T
T
-
C
A
C
T
G
-
A
A
G
A
A
T
T
T
G
2
A
A
A
A
G
A
A
T
G
A
C
G
C
G
A
T
A
T
C
T
A
T
T
G
T
A
G
-
A
G
7
C
A
T
T
G
T
A
G
C
G
A
G
G
A
G
-
-
C
T
A
T
G
T
G
C
C
A
A
T
17
G
A
-
G
2
T
G
C
A
A
T
C
T
G
A
C
G
4
A
A
G
T
A
G
T
G
T
  87,245,836
  87,245,980
  87,246,303
  87,246,381
  87,247,044
  87,247,620
  87,247,871
  87,248,207
  87,248,685
  87,249,779
  87,250,008
  87,250,539
  87,250,656
  87,251,159
  87,251,189
  87,251,382
  87,251,390
  87,251,400
  87,251,438
  87,251,544
  87,251,904
  87,251,950
  87,252,057
  87,252,063
  87,252,067
  87,252,099
  87,252,102
  87,252,186
  87,252,381
  87,252,456
  87,252,493
  87,252,605
  87,252,798
  87,253,232
  87,253,393
  87,253,631
  87,253,674
  87,254,471
  87,254,674
  87,254,962
  87,255,486
  87,255,802
  87,256,124
  87,256,272
  87,256,425
  87,256,510
  87,256,514
  87,256,556
  87,256,937
  87,256,943
  87,257,586
  87,257,588
  87,257,707
  87,257,877
  87,257,979
  87,258,234
  87,258,247
  87,261,125
  87,261,169
  87,262,455
  87,263,038
  87,263,095
  87,263,334
  87,265,449
  87,265,871
  87,266,897
  87,269,129
  87,269,535
  87,269,634
  87,270,868
  87,270,992
  87,271,033
  87,272,294
  87,272,972
  87,274,251
  87,274,685
  87,278,398
  87,279,098
  87,279,937
  87,283,707
  87,286,602
  87,287,943
  87,288,033
  87,288,676
  87,288,721
  87,288,798
  87,289,115
  87,289,433
  87,289,631
  87,289,680
  87,289,697
  87,290,005
  87,290,386
  87,290,632
  87,290,975
  87,291,051
  87,291,197
  87,292,244
  87,292,293
  87,292,651
  87,292,750
  87,293,359
  87,293,753
  87,293,947
  87,294,037
  87,294,316
  87,294,533
  87,294,574
  87,294,839
  87,295,072
  87,295,290
  87,295,531
  87,295,565
  87,296,490
  87,296,606
  87,296,855
  87,296,946
  87,296,948
  87,296,950
  87,296,952
  87,297,100
  87,297,255
  87,297,486
  87,298,834
  87,298,929
  87,299,337
  87,299,531
  87,300,969
  87,301,312
  87,305,378
  87,315,640
  87,315,805
  87,316,040
  87,316,226
  87,316,592
  87,317,270
  87,317,285
  87,318,046
  87,318,817
  87,318,929
  87,318,977
  87,319,417
  87,319,724
  87,320,254
  87,320,689
  87,321,124
  87,321,176
  87,321,248
  87,321,766
  87,322,310
  87,322,634
  87,325,668
  87,326,133
  87,327,236
  87,328,375
  87,328,405
  87,328,515
  87,328,832
  87,328,836
  87,328,940
  87,328,962
  87,328,969
  87,329,920
  87,330,150
  87,330,268
  87,330,312
  87,331,948
  87,332,842
  87,332,849
  87,333,156
  87,333,797
  87,333,995
  87,334,672
  87,334,829
  87,336,674
  87,338,013
  87,339,602
  87,340,982
  87,341,115
  87,341,158
  87,341,241
  87,341,398
  87,341,584
  87,343,338
  87,344,040
  87,344,490
  87,344,504
  87,344,965
  87,345,227
  87,346,384
  87,346,671
  87,346,687
  87,346,724
  87,346,726
  87,348,997
  87,349,619
  87,350,074
  87,350,108
  87,350,111
  87,350,129
  87,350,161
  87,350,165
  87,352,825
  87,353,214
  87,353,216
  87,353,768
  87,354,695
  87,354,989
  87,355,257
  87,355,265
  87,357,421
  87,359,332
  87,359,468
  87,360,949
  87,361,525
  87,363,250
  87,364,749
  87,366,550
  87,367,460
  87,369,547
  87,369,683
  87,370,495
  87,370,792
  87,371,947
  87,372,025
  87,373,567
  87,373,684
  87,374,246
  87,375,890
  87,376,316
  87,378,767
  87,379,311
  87,379,794
  87,382,001
  87,383,499
  87,386,074
  87,386,833
  87,387,177
  87,387,260
  87,387,840
  87,388,358
  87,389,267
  87,390,042
  87,390,088
  87,390,277
  87,390,744
  87,390,795
  87,391,171
  87,391,200
  87,391,209
  87,391,210
  87,392,094
  87,393,512
  87,393,552
  87,394,207
  87,395,015
  87,395,386
  87,395,543
  87,396,209
  87,396,210
  87,396,630
  87,396,715
  87,397,036
  87,398,995
  87,399,013
  87,399,015
  87,399,071
  87,399,179
  87,399,266
  87,399,270
  87,399,361
  87,399,970
  87,399,997
  87,400,141
  87,400,416
  87,400,469
  87,400,520
  87,400,534
  87,400,576
  87,401,215
  87,401,282
  87,401,365
  87,401,366
  87,401,611
  87,401,880
  87,401,881
  87,402,234
  87,402,292
  87,402,335
  87,402,832
  87,402,834
  87,404,564
  87,404,566
  87,404,568
  87,404,609
  87,405,803
  87,405,964
  87,406,977
  87,406,980
  87,406,995
  87,407,004
  87,407,007
  87,407,015
  87,407,039
  87,407,093
  87,407,132
  87,407,134
  87,407,136
  87,407,222
  87,407,263
  87,407,266
  87,407,288
  87,407,289
  87,407,488
  87,408,033
  87,408,126
  87,408,127
  87,408,815
  87,408,949
  87,409,064
  87,409,082
  87,409,181
  87,409,328
  87,409,648
  87,409,650
  87,409,668
  87,409,727
  87,409,731
  87,409,759
  87,409,801
  87,409,841
  87,409,846
  87,409,847
  87,409,853
  87,409,930
  87,409,953
  87,409,969
  87,410,000
  87,410,239
  87,410,300
  87,410,819
  87,410,848
  87,410,849
  87,410,874
  87,410,883
  87,410,986
  87,411,181
  87,411,229
  87,411,301
  87,411,466
  87,411,508
  87,411,599
  87,411,778
  87,412,586
  87,413,005
  87,413,031
T
-
4
G
T
A
T
G
11
-
C
G
A
G
G
A
C
T
G
C
C
C
-/G
T/-
?
C
C
T
A
C
A
G
T
C
T
A
G
-
T
4
C
A
A
T
G
A
G
C
T
C
-
T
A
C
C
G
T
G
A
C
C
C
T
G
A
6
C
G
-
A/-
C
-
T
G
A
A
3
-
C
T
-
G
G
T
C
T
A
C
4
-
G
A
T
T
C
T
C
C
T
T
A
A
T
T
A
C
C
C
2
T
T
A
T
T
C
T
-
-
G
-
-
A
A
G
A
G
T
T
A
C
C
G
31
C
G
G
T
T
-
T
A
A
G
G
C
T
A
G
C
G/C
G
G
A
C
T
C
T
T
A
T
A
C
G
A
T
-
A
A
A
6
C
-
C
27
C
T
G
T
G
A
G
A
A
C
G
5
C
C
-/T
G
A
A
A
G
A
T
G
A/-
-/G
-/G
G/-
-/G
A
C
C
A
T
A
A
A
T
T
A
A
T
A
T
T
-/A
A
G
A/-
C
C
C
A
C
T
G
T
A
-
C
G
G
T
A
A
A
G/T
A
A
A
A
A
-
-/G
2
4/-
C/-
C/-
14
T
G
A
C
A
2
T
C
A
-
G
A/-
A/-
T/A
A/-
-
T
T
G
G
A
G
G
C
A
G
A
C
T
A
G
C
G
C
G
C
C
A
A
C
G
T
A
-/3
G
G/C
7/-
C/T
A/G
T/G
T/C
A
C
C
A
T
A
G
C
T
T
A
4
T
T
C
G
G
A
A
A
T
T
G
G
C
-
C
C
C
C
-
C
T
T
C
G
C
T
C
A
G
A
A
-
G
C
C
C
C
A
C
-
A