Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
  Home     Edit Strains     Edit Gene List     Sequence Annotation
 Assembly mRatBN7.2
   

Chromosome Start Position Stop Position
Region Size: 80,715 (bp)   Positions: 319
Genes ( + ) 
Genes ( - ) 
mRatBN7.2  
HXB31/IpcvMcwi (2019) 
Tpd52
Tpd52
Tpd52
Tpd52
Tpd52
Tpd52
Tpd52
Tpd52
Tpd52
Tpd52
Tpd52
Tpd52
Tpd52
Tpd52
Tpd52
Tpd52
Tpd52
Tpd52
Tpd52
Tpd52
Tpd52
Tpd52
Tpd52
Tpd52
Tpd52
Tpd52
Tpd52
Tpd52
Tpd52
Tpd52
Tpd52
Tpd52
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
T
T
C
-
2
C
-
T
T
T
A
A
A
G
T
A
T
C
C
T
C
T
T
11
T
G
T
C
C
C
T
G
C
A
A
G
T
A
A
A
A
A
A
A
A
A
A
A
A
A
G
C
3
G
A
G
G
G
A
C
T
T
T
T
C
C
G
T
A
T
A
A
A
C
T
G
C
A
A
C
T
T
C
C
C
G
T
C
T
C
C
20
T
22
G
C
T
A
G
C
G
T
C
C
G
C
-
T
A
C
A
C
A
C
G
A
C
T
A
T
C
C
T
G
G
C
A
G
C
G
C
G
A
G
G
T
A
T
T
G
C
C
T
C
C
A
C
T
T
C
C
7
G
T
-
A
A
A
-
-
C
C
2
T
G
G
C
109
A
C
C
C
A
T
G
A
A
T
G
5
G
G
2
G
A
T
G
A
T
C
G
G
C
C
T
G
A
G
T
G
C
C
T
C
-
-
A
A
C
T
C
C
T
G
T
A
G
C
A
T
A
A
C
C
C
T
T
G
C
T
C
C
C
T
-
C
T
-
G
C
A
C
-
C
G
A
A
C
G
-
T
A
G
G
-
T
T
T
G
C
A
G
-
T
G
C
-
T
-
A
-
-
A
-
A
A
A
T
T
G
T
A
C
G
-
G
C
-
2
-
G
G
A
C
T
T
C
-
C
A
-
C
-
G
A
C
T
G
C
-
-
-
C
G
G
T
-
G
-
  92,740,473
  92,741,836
  92,750,501
  92,751,472
  92,751,520
  92,752,041
  92,752,516
  92,757,561
  92,759,381
  92,759,420
  92,760,301
  92,760,758
  92,761,224
  92,761,329
  92,761,402
  92,761,626
  92,761,853
  92,762,146
  92,762,459
  92,762,864
  92,763,190
  92,763,867
  92,763,875
  92,763,989
  92,764,013
  92,764,140
  92,764,217
  92,764,274
  92,765,166
  92,766,136
  92,766,754
  92,766,759
  92,768,237
  92,769,698
  92,771,157
  92,771,627
  92,772,163
  92,773,684
  92,773,688
  92,773,689
  92,773,690
  92,773,691
  92,773,692
  92,773,693
  92,773,694
  92,773,695
  92,773,696
  92,773,699
  92,773,701
  92,773,702
  92,775,406
  92,775,598
  92,775,603
  92,775,629
  92,775,834
  92,776,074
  92,776,647
  92,776,980
  92,777,435
  92,777,543
  92,777,960
  92,777,983
  92,778,913
  92,779,173
  92,779,285
  92,779,567
  92,779,710
  92,781,339
  92,781,673
  92,782,241
  92,782,691
  92,782,768
  92,782,970
  92,783,154
  92,783,712
  92,783,802
  92,783,807
  92,784,193
  92,784,327
  92,784,385
  92,784,832
  92,785,300
  92,785,337
  92,785,384
  92,785,724
  92,785,844
  92,785,916
  92,786,734
  92,786,776
  92,787,009
  92,787,674
  92,788,000
  92,788,572
  92,788,849
  92,788,945
  92,789,126
  92,789,451
  92,789,699
  92,789,735
  92,789,820
  92,790,314
  92,790,320
  92,790,878
  92,791,013
  92,791,532
  92,792,168
  92,792,262
  92,792,407
  92,792,733
  92,792,880
  92,792,971
  92,793,014
  92,793,269
  92,793,319
  92,793,518
  92,793,688
  92,793,753
  92,794,131
  92,794,158
  92,794,205
  92,794,426
  92,794,439
  92,794,490
  92,794,675
  92,794,734
  92,795,249
  92,795,335
  92,795,629
  92,795,831
  92,795,847
  92,795,882
  92,795,914
  92,796,298
  92,796,316
  92,796,357
  92,796,409
  92,796,488
  92,796,489
  92,796,491
  92,796,508
  92,796,915
  92,796,917
  92,797,177
  92,797,205
  92,797,232
  92,797,255
  92,797,279
  92,797,297
  92,797,303
  92,797,431
  92,797,498
  92,797,507
  92,797,635
  92,797,670
  92,797,674
  92,797,697
  92,797,709
  92,797,713
  92,797,790
  92,797,877
  92,797,958
  92,797,965
  92,798,019
  92,798,040
  92,798,070
  92,798,112
  92,798,116
  92,798,330
  92,798,365
  92,798,528
  92,798,554
  92,798,695
  92,798,722
  92,798,918
  92,799,079
  92,799,136
  92,799,162
  92,799,240
  92,799,446
  92,799,560
  92,799,633
  92,799,642
  92,799,707
  92,799,888
  92,799,890
  92,799,904
  92,800,027
  92,800,040
  92,800,050
  92,800,706
  92,800,813
  92,800,825
  92,800,842
  92,800,850
  92,801,386
  92,801,652
  92,801,815
  92,801,949
  92,802,208
  92,802,722
  92,802,864
  92,802,870
  92,803,099
  92,803,136
  92,803,268
  92,803,269
  92,803,580
  92,803,667
  92,803,749
  92,803,766
  92,803,803
  92,803,844
  92,803,873
  92,804,147
  92,804,387
  92,804,603
  92,804,897
  92,805,097
  92,805,182
  92,805,453
  92,805,521
  92,805,916
  92,806,058
  92,806,281
  92,806,477
  92,806,487
  92,806,893
  92,806,995
  92,807,474
  92,807,816
  92,807,846
  92,808,388
  92,808,414
  92,808,637
  92,809,069
  92,809,255
  92,809,418
  92,809,474
  92,809,928
  92,810,106
  92,810,147
  92,810,564
  92,810,750
  92,811,043
  92,811,095
  92,811,122
  92,811,264
  92,811,380
  92,811,431
  92,811,482
  92,811,484
  92,811,509
  92,811,520
  92,811,624
  92,811,743
  92,811,748
  92,811,750
  92,811,821
  92,811,961
  92,812,073
  92,812,161
  92,812,196
  92,812,236
  92,812,344
  92,812,365
  92,812,366
  92,812,390
  92,812,476
  92,812,509
  92,812,549
  92,812,614
  92,812,704
  92,812,777
  92,812,783
  92,812,834
  92,812,883
  92,812,936
  92,812,965
  92,813,054
  92,813,063
  92,813,076
  92,813,114
  92,813,224
  92,813,408
  92,813,434
  92,813,447
  92,813,452
  92,813,478
  92,813,580
  92,813,708
  92,813,850
  92,814,079
  92,814,097
  92,814,140
  92,814,271
  92,814,316
  92,814,356
  92,814,428
  92,814,659
  92,814,683
  92,814,721
  92,814,751
  92,814,770
  92,814,859
  92,815,055
  92,815,093
  92,815,149
  92,815,183
  92,815,241
  92,815,246
  92,815,286
  92,815,289
  92,815,346
  92,815,639
  92,815,646
  92,815,704
  92,815,779
  92,815,911
  92,816,069
A
C
T/A
6
-
T
2
-/C
A/C
G
G
C
-
A
G
G
C
T
T
G
G
C
C
-
G
C
C
T
T
-
A
A
G
G
C
T
G
G
-/C
C/-
C/-
C/-
C/-
-/C
-/C
C/-
-/C
-/C
-/C
C/-
A
-
-
A
T
C
T
C
G
T
C
C
C
A
G
T
A
A
G
G
C
C
G
T
C
C
G
G
G
G
C
C
G
T
T
T
G
T
C
T
T
-
C
-
A
G
G
C
T
T
A
C
T
T
A
T
C
C
G
T
C
-
T
T
A
G
-
C
T
C
T
T
C
A
A
T
G
A
T
A
T
A
G
A
A
C
G
A
C
A
-/G
T/-
-
T
T
G
T
G
G
T
A
-
T
C
8
-/G
-/G
G
A
T
T
T
-
C
-
A
T
-
G/-
T
T
T
G
C
A
G
G
C
A
-
A
A
-
T
G
G
A
G
C
A
A
A
T
T
G
C
G
A
G
C
T
G
C
G
C
G
-
G
T
A
T
T
C
A
C
G
A
T
C
C
G
C
T
T
T
G
C
A
-
-
T
G
A
-
G
T
G/-
T
A
T
-
T
A
A
A
G
-
T
-
A
A
-
A
-
C
-
G
-
-
-
G
-
T
C
C
G/A
G
-
G
G
G
T
-
A
G
-
-
C
G
-
-
G
-
-
G
-
-
A
-
G
T
-
-
-
-
C
-
A
-
G
T
T
T
A
-
G
A
A
G
T
A
C
-
-
T
-
A
-
T