Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
  Home     Edit Strains     Edit Gene List     Sequence Annotation
 Assembly mRatBN7.2
   

Chromosome Start Position Stop Position
Region Size: 176,583 (bp)   Positions: 572
Genes ( + ) 
Genes ( - ) 
mRatBN7.2  
LH/MavRrrcAek (2020) 
Slx4ip
Slx4ip
Slx4ip
Slx4ip
Slx4ip
Slx4ip
Slx4ip
Slx4ip
Slx4ip
Slx4ip
Slx4ip
Slx4ip
Slx4ip
Slx4ip
Slx4ip
Slx4ip
Slx4ip
Slx4ip
Slx4ip
Slx4ip
Slx4ip
Slx4ip
Slx4ip
Slx4ip
Slx4ip
Slx4ip
Slx4ip
Slx4ip
Slx4ip
Slx4ip
Slx4ip
Slx4ip
Slx4ip
Slx4ip
Slx4ip
Slx4ip
Slx4ip
Slx4ip
Slx4ip
Slx4ip
Slx4ip
Slx4ip
Slx4ip
Slx4ip
Slx4ip
Slx4ip
Slx4ip
Slx4ip
Slx4ip
Slx4ip
Slx4ip
Slx4ip
Slx4ip
Slx4ip
Slx4ip
Slx4ip
Slx4ip
Slx4ip
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
LOC120101686
LOC120101686
LOC120101686
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
LOC108350474
LOC108350474
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
T
-
T
T
-
G
-
C
A
37
G
-
A
T
G
A
G
A
-
A
A
C
3
G
G
C
G
T
-
G
G
T
A
T
C
C
T
T
A
C
A
A
T
A
G
T
C
19
G
G
C
G
-
T
T
T
G
A
C
C
24
T
C
A
A
G
T
T
G
T
A
T
T
T
A
C
G
4
C
C
-
T
A
-
G
C
T
C
C
A
G
2
T
T
-
-
G
G
A
C
C
G
C
G
6
G
A
T
A
T
C
T
A
C
A
G
A
G
G
T
A
-
G
C
C
A
G
A
A
C
C
C
A
A
-
T
-
G
G
C
A
20
G
A
-
A
A
G
A
-
T
50
T
A
G
A
T
G
G
-
-
A
A
C
C
G
34
-
C
T
A
T
C
G
A
A
A
A
A
T
G
G
A
5
T
A
C
T
A
G
A
-
T
-
-
C
T
A
G
C
G
G
C
T
A
A
T
C
C
G
C
T
A
-
C
A
G
T
C
T
A
T
C
-
T
6
T
T
C
T
T
T
A
G
A
T
T
G
G
A
T
T
A
T
-
C
C
A
C
A
T
T
G
G
G
T
T
G
T
G
T
G
C
C
T
C
G
T
A
T
C
C
G
T
T
T
C
C
C
T
G
C
A
T
T
T
G
3
T
G
C
C
G
G
C
-
G
T
A
T
C
A
13
A
G
G
A
T
G
2
A
A
A
A
A
A
A
A
A
A
A
A
T
A
A
C
-
C
-
T
T
A
C
G
A
T
T
A
A
G
G
-
G
A
A
G
G
C
-
-
A
T
8
C
G
4
G
G
A
A
G
G
G
2
T
T
G
T
C
T
A
A
C
T
A
G
G
G
G
18
T
C
T
A
12
C
C
A
A
A
T
T
C
C
T
G
C
C
T
A
G
C
G
A
A
T
T
C
T
A
A
T
C
32
T
T
A
C
G
G
C
C
C
G
6
17
C
T
A
C
C
C
G
T
C
C
A
G
-
C
T
-
C
G
C
C
T
G
T
C
T
T
A
A
G
A
G
C
G
A
-
2
A
T
-
A
T
A
C
T
T
A
T
G
G
-
A
A
-
18
-
G
G
C
T
A
G
G
C
C
-
A
G
G
G
T
A
A
T
A
C
-
-
-
G
T
G
A
T
G
A
T
G
A
T
C
A
C
G
A
-
G
G
G
G
A
G
G
T
A
-
G
C
A
C
T
C
G
G
T
3
C
T
A
-
-
C
A
A
G
A
C
-
2
T
C
T
A
-
A
A
T
19
C
G
C
-
C
C
G
G
A
  124,221,574
  124,221,660
  124,221,861
  124,223,435
  124,223,729
  124,223,971
  124,225,040
  124,225,471
  124,226,663
  124,231,299
  124,231,984
  124,236,395
  124,236,727
  124,237,764
  124,239,714
  124,240,679
  124,241,607
  124,242,302
  124,243,783
  124,244,094
  124,244,464
  124,247,153
  124,247,229
  124,247,263
  124,247,515
  124,248,030
  124,248,262
  124,248,272
  124,248,966
  124,249,023
  124,249,856
  124,249,903
  124,250,533
  124,251,537
  124,252,477
  124,252,552
  124,252,563
  124,253,088
  124,253,289
  124,253,333
  124,253,461
  124,253,653
  124,254,029
  124,254,218
  124,255,013
  124,255,466
  124,255,806
  124,256,358
  124,256,615
  124,256,627
  124,257,025
  124,257,946
  124,258,194
  124,258,199
  124,258,859
  124,258,865
  124,258,922
  124,259,380
  124,259,998
  124,260,517
  124,260,649
  124,260,889
  124,261,036
  124,261,064
  124,261,344
  124,262,388
  124,262,411
  124,262,602
  124,262,603
  124,262,611
  124,262,650
  124,262,931
  124,263,563
  124,263,817
  124,264,239
  124,264,574
  124,264,641
  124,264,644
  124,264,720
  124,264,730
  124,265,200
  124,265,381
  124,265,447
  124,265,803
  124,265,960
  124,266,029
  124,266,044
  124,266,061
  124,266,112
  124,266,443
  124,266,911
  124,267,176
  124,267,462
  124,267,578
  124,267,681
  124,267,687
  124,267,700
  124,267,705
  124,267,713
  124,267,714
  124,267,842
  124,267,862
  124,268,078
  124,268,084
  124,271,992
  124,273,699
  124,273,781
  124,274,416
  124,274,420
  124,274,705
  124,274,923
  124,274,958
  124,275,409
  124,275,667
  124,275,845
  124,276,044
  124,276,097
  124,276,497
  124,276,503
  124,276,595
  124,276,817
  124,276,847
  124,276,963
  124,277,061
  124,277,150
  124,277,332
  124,277,396
  124,277,493
  124,277,758
  124,277,765
  124,277,811
  124,278,133
  124,278,179
  124,278,322
  124,278,342
  124,280,454
  124,280,792
  124,280,913
  124,280,948
  124,281,043
  124,281,234
  124,281,613
  124,281,835
  124,281,836
  124,281,951
  124,282,400
  124,282,798
  124,283,037
  124,283,233
  124,283,932
  124,284,190
  124,284,456
  124,284,800
  124,285,115
  124,285,191
  124,285,429
  124,285,552
  124,285,840
  124,285,902
  124,286,072
  124,286,377
  124,286,423
  124,286,816
  124,287,027
  124,287,110
  124,287,479
  124,287,585
  124,288,033
  124,288,445
  124,289,186
  124,289,528
  124,289,889
  124,290,022
  124,290,312
  124,290,353
  124,290,432
  124,290,703
  124,291,038
  124,291,061
  124,291,199
  124,291,324
  124,292,027
  124,292,313
  124,292,634
  124,292,701
  124,293,529
  124,293,638
  124,293,762
  124,294,123
  124,294,135
  124,294,240
  124,294,842
  124,294,888
  124,294,906
  124,294,932
  124,295,195
  124,295,613
  124,295,766
  124,295,803
  124,295,976
  124,296,075
  124,296,204
  124,296,284
  124,296,797
  124,296,940
  124,297,049
  124,297,050
  124,297,138
  124,297,359
  124,297,595
  124,298,221
  124,298,287
  124,298,309
  124,298,522
  124,299,209
  124,299,722
  124,299,723
  124,299,728
  124,299,732
  124,299,757
  124,299,764
  124,299,810
  124,299,820
  124,300,020
  124,300,262
  124,300,396
  124,300,470
  124,300,600
  124,300,809
  124,300,967
  124,301,029
  124,301,102
  124,301,124
  124,301,229
  124,301,301
  124,301,337
  124,301,428
  124,301,556
  124,301,567
  124,301,575
  124,301,771
  124,301,802
  124,302,519
  124,302,602
  124,302,699
  124,303,042
  124,303,391
  124,303,819
  124,303,899
  124,303,900
  124,304,058
  124,304,096
  124,304,117
  124,304,123
  124,304,134
  124,304,158
  124,304,159
  124,304,196
  124,304,238
  124,304,627
  124,304,848
  124,304,889
  124,304,900
  124,305,051
  124,305,056
  124,305,279
  124,305,310
  124,305,312
  124,305,392
  124,305,397
  124,305,446
  124,305,795
  124,305,835
  124,305,876
  124,305,977
  124,306,041
  124,306,063
  124,306,418
  124,306,618
  124,307,259
  124,308,074
  124,308,180
  124,308,443
  124,308,505
  124,308,573
  124,309,268
  124,309,886
  124,310,141
  124,310,747
  124,311,339
  124,311,995
  124,312,417
  124,313,139
  124,313,433
  124,313,500
  124,313,903
  124,313,975
  124,314,208
  124,314,520
  124,314,584
  124,315,284
  124,315,790
  124,315,966
  124,316,544
  124,316,593
  124,317,258
  124,317,664
  124,317,966
  124,318,159
  124,318,190
  124,318,193
  124,318,195
  124,318,196
  124,318,198
  124,318,199
  124,318,201
  124,318,204
  124,318,205
  124,318,208
  124,318,213
  124,318,914
  124,319,194
  124,320,855
  124,321,550
  124,321,969
  124,322,498
  124,322,504
  124,322,532
  124,322,746
  124,323,100
  124,323,366
  124,323,493
  124,324,382
  124,324,443
  124,324,549
  124,324,645
  124,325,410
  124,326,821
  124,327,429
  124,327,589
  124,327,707
  124,327,943
  124,328,067
  124,328,113
  124,328,335
  124,328,734
  124,329,417
  124,329,496
  124,329,498
  124,330,158
  124,330,407
  124,331,172
  124,331,175
  124,331,296
  124,331,386
  124,331,388
  124,331,391
  124,331,545
  124,331,623
  124,331,657
  124,331,807
  124,332,110
  124,332,242
  124,332,377
  124,332,447
  124,332,451
  124,332,923
  124,333,451
  124,333,676
  124,334,372
  124,334,669
  124,335,096
  124,335,100
  124,335,109
  124,335,167
  124,335,184
  124,335,431
  124,335,820
  124,335,844
  124,336,156
  124,336,157
  124,336,199
  124,336,296
  124,336,349
  124,336,407
  124,336,425
  124,336,543
  124,336,547
  124,336,825
  124,337,213
  124,337,673
  124,337,677
  124,337,903
  124,337,962
  124,338,712
  124,338,819
  124,338,851
  124,339,597
  124,340,157
  124,340,999
  124,341,003
  124,341,231
  124,341,331
  124,341,349
  124,341,829
  124,342,638
  124,343,438
  124,343,575
  124,343,650
  124,343,741
  124,344,082
  124,344,422
  124,344,438
  124,344,472
  124,344,479
  124,344,483
  124,344,855
  124,344,902
  124,345,292
  124,345,398
  124,345,443
  124,345,445
  124,345,517
  124,345,681
  124,346,099
  124,346,152
  124,346,326
  124,346,387
  124,346,427
  124,346,769
  124,347,100
  124,347,325
  124,347,482
  124,347,675
  124,348,246
  124,348,735
  124,349,058
  124,349,114
  124,350,003
  124,350,181
  124,350,539
  124,350,839
  124,351,000
  124,351,262
  124,351,527
  124,351,533
  124,351,856
  124,352,380
  124,352,844
  124,352,916
  124,353,196
  124,353,240
  124,353,644
  124,353,719
  124,353,935
  124,354,062
  124,354,076
  124,354,133
  124,354,897
  124,355,000
  124,355,612
  124,355,875
  124,356,037
  124,356,284
  124,356,326
  124,356,602
  124,356,623
  124,357,108
  124,357,441
  124,358,144
  124,358,167
  124,358,175
  124,358,408
  124,358,534
  124,358,540
  124,358,551
  124,358,552
  124,358,558
  124,358,563
  124,358,652
  124,358,733
  124,358,747
  124,358,776
  124,358,994
  124,359,013
  124,359,200
  124,359,318
  124,359,362
  124,359,391
  124,359,457
  124,359,843
  124,359,846
  124,359,905
  124,360,360
  124,360,534
  124,360,629
  124,360,715
  124,360,717
  124,360,816
  124,360,900
  124,361,417
  124,361,928
  124,361,932
  124,361,934
  124,362,184
  124,362,190
  124,362,402
  124,362,561
  124,362,948
  124,363,308
  124,363,439
  124,363,778
  124,363,832
  124,363,900
  124,363,972
  124,364,778
  124,365,147
  124,365,210
  124,365,221
  124,365,431
  124,365,578
  124,365,976
  124,366,051
  124,366,255
  124,366,259
  124,366,265
  124,366,338
  124,366,420
  124,366,522
  124,366,605
  124,366,659
  124,366,779
  124,366,897
  124,366,937
  124,367,716
  124,370,020
  124,370,886
  124,371,129
  124,371,776
  124,371,814
  124,372,131
  124,373,145
  124,373,917
  124,375,110
  124,375,531
  124,375,961
  124,375,975
  124,377,736
  124,378,862
  124,381,269
  124,382,653
  124,386,892
  124,386,956
  124,387,350
  124,388,127
  124,388,407
  124,388,503
  124,389,807
  124,390,385
  124,390,412
  124,390,415
  124,391,781
  124,391,783
  124,392,467
  124,394,311
  124,394,319
  124,394,367
  124,394,400
  124,394,503
  124,394,756
  124,395,264
  124,396,713
C
4
C
C
A
A
4
T
T
-
C
G
G
C
A
G
A
G
C
G
G
G
-
-
A
A
A
C
T
A
A
C
-
G
T
T
C
C
G
T
G
G
A
C
A
C
T
-
T
A/-
T
A
2
G
G
G
A
G
T
T
-
C
T
G
C
A
A
G
T
C
G
C
G
C
T
T
-
-
A
T
4
C
G
3
T
T
A
T
T
G
C
-
C
C
4
7
T
G/T
A/T
T/A
A
C
T
A
-
C
G
C
T
A
A
C
G
T
C
A
C
A
A
C
-
2
A
A
T
G
A
G
C
T
T
A
G
-
A
C
2
A
T
T
G
-
A
G
C
G
G
C
G
6
C
-
C
C
A
C
C
A
C
G
6
C
G
T
T
A
34/-
A
T
A
-
G
T
A
G
G
G
G
C
C
T
T
G
-
C
G
A
C
G
T
T
97
A
2
T
T
C
G
A
-
A
A
A
C
G
G
C
T
A
A
T
C
T
2
T
C
A
G
G
C
G
G
T
T
C
-
C
-
-
C
C
C
G
A
G
C
C
T
A
T
C
C
G
T/C
-/4
T
T
G
A
G
C
G
A
A
T
A
G
A
A
A
C
A
A
T
A
T
A
C
C
G
G
G
A
-
C
G
A
A
T
-
T
T
G
C
C
G
T
-
G
T
T
T
-
A
A
2
C
C
G
C
T
G
-
G
T
A
G
G
A
?
C/-
C/-
-/C
-/C
-/C
-/C
-/C
C/-
-/C
C
G
G
G
G
G
G
T
T
C
G/-
C
T
T
A
G
C
A
G
G
C
C
T
C/-
-/G
G
A
A
T
2
4
G
-
-
T
-
-
-/A
C
G
G
A
A
A
-
-/A
-/A
A
C
T
C
G
G
T
C
G
A
C
A
A
18/-
-/C
G/-
C
C
-
T
T
G
-
C
C
C
T
T
C
A
T
T
G
G
T
T
C
T
C
C
C
A
C
G
C
C
T
-
-/C
C/-
T
T
C
A
-/T
T/-
T
A
-
-
-
C
G
A
T
T
A
C
T
T
G
A
T
A
A
G
T
A
T
T
C
A
A
T
C
C
G
G
C
G
A
T
A
G
2
-
C
C
6
C
G
G
A
C
G
G
C
A
A
-/2
A/G
A/G
-/2
-
C
A
C
T
C
G
C
A
T
T
2
G
A
A
A
-
-/G
-/G
C
G
T
54
14
6
A
C
C
G
G
A
G
C
A
-
A
G
G
T
A
G
2
A
T
A
A
-
A
A
A
G
T
C
T
G
T
G
G
A
A
C
-
T
-
T
T
7
T
G
G
A
G
T
2
-
C
T
G
G
9
C/-
-/C
-
-
G
A
A
T
T
G
A
A
G