Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
  Home     Edit Strains     Edit Gene List     Sequence Annotation
 Assembly mRatBN7.2
   

Chromosome Start Position Stop Position
Region Size: 289,280 (bp)   Positions: 395
Genes ( + ) 
Genes ( - ) 
mRatBN7.2  
ACI/EurMcwi (2019) 
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
Rasal2
Rasal2
Rasal2
Rasal2
Rasal2
Rasal2
Rasal2
Rasal2
Rasal2
Rasal2
Rasal2
Rasal2
Rasal2
Rasal2
Rasal2
Rasal2
Rasal2
Rasal2
Rasal2
Rasal2
Rasal2
Rasal2
Rasal2
Rasal2
Rasal2
Rasal2
Rasal2
Rasal2
Rasal2
Rasal2
Rasal2
Rasal2
Rasal2
Rasal2
Rasal2
Rasal2
Rasal2
Rasal2
Rasal2
Rasal2
G
4
C
C
G
T
T
-
A
T
-
A
C
C
G
T
T
G
C
G
A
T
A
A
T
T
T
3
A
A
A
G
C
A
G
G
C
A
T
G
T
-
A
T
G
-
C
T
C
A
22
C
T
2
T
A
A
G
T
T
A
T
C
C
T
T
C
-
G
G
T
T
T
A
C
C
A
C
A
A
-
G
C
A
-
A
C
G
G
17
G
A
T
A
C
C
4
C
C
A
G
A
A
-
A
T
4
A
C
T
C
-
T
-
C
A
A
T
A
A
G
T
3
T
-
A
A
T
-
G
9
T
T
A
C
A
G
G
A
2
A
-
T
C
2
G
A
T
G
A
C
C
-
G
T
A
C
G
G
-
G
T
C
G
C
3
A
C
G
C
A
T
-
A
G
A
-
C
T
G
T
C
-
G
T
A
T
G
T
G
G
G
G
G
T
G
T
C
2
G
G
T
A
T
A
G
G
A
-
A
A
-
G
G
C
A
A
-
G
G
G
C
T
T
T
T
T
2
A
A
G
T
T
T
T
T
G
C
T
G
C
T
-
T
T
C
T
A
A
A
G
A
A
A
T
T
T
C
-
A
C
T
T
7
2
A
T
G
T
T
T
A
T
T
C
A
G
G
A
-
G
A
A
G
4
-
-
T
A
A
A
G
-
G
G
G
A
2
A
-
C
C
T
G
G
G
G
G
G
G
G
G
T
A
-
C
A
A
T
C
A
C
T
G
G
G
G
C
C
G
C
4
A
A
C
A
T
T
-
3
T
C
C
A
T
A
A
T
-
A
G
G
A
G
A
C
G
C
A
T
A
T
G
T
C
G
G
-
C
C
A
C
104
G
-
A
G
A
G
A
A
C
C
T
C
T
C
G
5
A
15
-
C
G
G
  69,299,055
  69,299,057
  69,300,638
  69,302,637
  69,311,648
  69,311,701
  69,311,865
  69,312,140
  69,312,819
  69,313,155
  69,314,313
  69,315,487
  69,316,831
  69,317,165
  69,321,245
  69,322,812
  69,322,816
  69,327,870
  69,328,910
  69,332,244
  69,332,246
  69,332,455
  69,333,104
  69,335,856
  69,335,867
  69,336,838
  69,338,098
  69,338,532
  69,342,727
  69,344,272
  69,345,274
  69,347,957
  69,351,201
  69,353,008
  69,354,260
  69,354,382
  69,355,016
  69,357,420
  69,359,225
  69,360,003
  69,361,750
  69,365,239
  69,367,238
  69,371,317
  69,371,375
  69,371,413
  69,376,450
  69,376,499
  69,376,608
  69,377,814
  69,377,909
  69,378,104
  69,378,740
  69,379,091
  69,379,390
  69,379,592
  69,379,682
  69,381,228
  69,381,402
  69,381,529
  69,381,947
  69,384,638
  69,384,697
  69,384,699
  69,386,475
  69,386,725
  69,386,773
  69,387,680
  69,388,389
  69,389,193
  69,390,844
  69,391,243
  69,392,114
  69,392,324
  69,393,002
  69,393,204
  69,394,724
  69,394,751
  69,396,253
  69,398,478
  69,400,540
  69,402,237
  69,402,507
  69,402,654
  69,403,493
  69,404,130
  69,404,271
  69,404,444
  69,404,847
  69,404,923
  69,404,925
  69,405,294
  69,405,478
  69,406,252
  69,406,335
  69,406,571
  69,406,648
  69,406,774
  69,406,790
  69,406,794
  69,406,876
  69,406,881
  69,407,070
  69,408,244
  69,408,444
  69,408,460
  69,408,657
  69,410,248
  69,413,193
  69,413,718
  69,414,040
  69,416,594
  69,417,647
  69,417,798
  69,419,135
  69,419,354
  69,419,645
  69,419,674
  69,419,965
  69,420,962
  69,421,224
  69,421,271
  69,422,304
  69,423,680
  69,423,848
  69,423,854
  69,426,859
  69,427,072
  69,427,638
  69,428,656
  69,429,176
  69,429,231
  69,429,570
  69,429,981
  69,430,805
  69,431,039
  69,431,055
  69,431,123
  69,431,813
  69,432,224
  69,432,541
  69,432,867
  69,433,311
  69,433,619
  69,433,968
  69,435,412
  69,435,506
  69,435,616
  69,437,209
  69,437,990
  69,438,081
  69,438,252
  69,438,477
  69,438,615
  69,439,541
  69,439,569
  69,439,880
  69,439,895
  69,440,144
  69,440,154
  69,440,470
  69,440,494
  69,441,076
  69,442,007
  69,443,183
  69,443,722
  69,443,887
  69,443,952
  69,444,091
  69,445,131
  69,445,690
  69,445,880
  69,445,898
  69,446,023
  69,446,675
  69,447,694
  69,448,446
  69,449,053
  69,449,346
  69,449,355
  69,449,475
  69,449,638
  69,450,154
  69,450,347
  69,452,032
  69,453,358
  69,455,061
  69,455,347
  69,455,715
  69,455,915
  69,455,917
  69,455,919
  69,455,921
  69,456,274
  69,456,346
  69,456,813
  69,457,633
  69,457,864
  69,458,129
  69,458,157
  69,458,427
  69,458,711
  69,458,855
  69,459,090
  69,459,091
  69,459,110
  69,459,452
  69,459,500
  69,459,855
  69,460,221
  69,460,238
  69,460,588
  69,460,842
  69,460,851
  69,460,906
  69,460,993
  69,461,010
  69,461,099
  69,461,106
  69,461,179
  69,461,231
  69,465,535
  69,467,377
  69,468,954
  69,469,263
  69,469,612
  69,470,835
  69,471,259
  69,471,264
  69,471,325
  69,471,919
  69,471,950
  69,472,760
  69,473,061
  69,473,185
  69,473,427
  69,473,886
  69,474,547
  69,474,600
  69,474,691
  69,474,834
  69,474,932
  69,475,072
  69,475,178
  69,475,317
  69,475,435
  69,478,083
  69,478,093
  69,479,301
  69,479,695
  69,480,043
  69,481,326
  69,481,328
  69,481,522
  69,481,969
  69,482,202
  69,482,319
  69,482,654
  69,482,719
  69,482,804
  69,483,581
  69,484,222
  69,484,399
  69,486,865
  69,486,953
  69,487,201
  69,487,286
  69,487,289
  69,487,734
  69,488,729
  69,489,152
  69,490,304
  69,490,329
  69,490,362
  69,490,550
  69,491,043
  69,491,044
  69,491,274
  69,491,893
  69,492,295
  69,495,106
  69,496,339
  69,497,647
  69,497,734
  69,498,251
  69,498,477
  69,498,497
  69,498,656
  69,498,696
  69,498,705
  69,501,623
  69,501,643
  69,502,668
  69,503,306
  69,503,310
  69,505,866
  69,506,495
  69,507,193
  69,508,463
  69,510,269
  69,511,876
  69,512,351
  69,515,608
  69,515,815
  69,515,821
  69,515,823
  69,515,825
  69,515,829
  69,515,831
  69,515,833
  69,515,835
  69,515,841
  69,516,883
  69,516,884
  69,521,136
  69,521,547
  69,522,175
  69,522,586
  69,522,587
  69,523,384
  69,523,521
  69,523,622
  69,523,828
  69,524,823
  69,524,900
  69,525,797
  69,526,468
  69,528,872
  69,533,530
  69,535,428
  69,535,656
  69,536,311
  69,536,752
  69,536,773
  69,538,809
  69,539,876
  69,540,455
  69,540,538
  69,541,253
  69,542,302
  69,544,635
  69,544,636
  69,545,105
  69,545,106
  69,545,128
  69,545,129
  69,545,156
  69,545,246
  69,545,641
  69,545,692
  69,546,636
  69,546,805
  69,549,888
  69,550,221
  69,550,361
  69,550,740
  69,550,784
  69,550,936
  69,551,340
  69,552,125
  69,552,138
  69,552,236
  69,552,258
  69,552,918
  69,554,690
  69,554,832
  69,555,715
  69,556,074
  69,556,165
  69,556,452
  69,557,140
  69,557,798
  69,558,144
  69,558,980
  69,559,181
  69,559,486
  69,559,571
  69,559,690
  69,560,745
  69,561,178
  69,561,562
  69,563,436
  69,563,792
  69,565,287
  69,565,541
  69,565,837
  69,566,014
  69,566,668
  69,566,882
  69,567,481
  69,567,777
  69,567,857
  69,568,670
  69,568,767
  69,568,822
T
-
T
G
C
A
C
10
G
C
A
G
T
T
A
T/A
A
A
T
-
C
G
-
G
C
C
C
-
G
G
-
A
T
T
A
A
T
T
C
A
C
2
G
C
A
A
T
A
T
T
-
T
C
-
C
G
-
A
C
C
G
C
G
G
C
-
C/-
G
A
A
G
C
C
C
-
A
T
G
G
-
4
A
G
-/G
2
G
G
A
A
-
-/A
-
A
-
T
T
-
A
A
T
A
T
G
T
C
A
-
G
T
G
T
A
C
7
T
T
T
C
G
G
A
A
-
C
T
T
A/-
-
T
A
-
C
C
-
T
T
-/T
A
G
-
-
4
G
T
-
A
G
C
A
-
T
T
T
A
C
T
A
A
A
A
T
C
T
T
T
-
G
T
C
A
G
A
T
T
A
G
A
T
A
A
G
T
T
A
-
G/-
C
A
A/A
C/-
-/C
-/C
C/-
T
C
A
C
A
-
C
A
C
T
A
T
A
C
C
A
G
G
2
T
C
T
G
G
A
-
A
C
T
-
C
C
C
G
-
G/-
G
A
G
A
C
G
C
A
T
C
C
A
G
T
G
C
A
C
C
G
G
T
T
T
G
C
C
C
T/-
14
G
T
C
C
-
-
G
C
A
C
-/C
C
A/G
T/G
T/C
C/G
G
A
G/A
G
A
T
T
G
A
-
10
10
A/-
T/-
G/-
G
A
7
-/A
-/A
A
G
-
C
12
T/TT
G
A
C
C/-
?
?
?
C/-
-/C
-/C
A/-
A
G
2
T
G
T
A
T
C
T
-
A
T
A
A
A
T
A
T
4/-
G
G
A
G
C
A/-
A
-
T/C
C/T
A
T
C
G
C
A
T
G
A
A
T
A
G
T
A
G
T
C
G
C
C
C
G
A
A
3
T
T
G
-/A
-
A
A
G
A
T
T
G
T
G
-
-
-
C
T
A
-
-
-
C
A
C
A