Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
  Home     Edit Strains     Edit Gene List     Sequence Annotation
 Assembly mRatBN7.2
   

Chromosome Start Position Stop Position
Region Size: 280,097 (bp)   Positions: 443
Genes ( + ) 
Genes ( - ) 
mRatBN7.2  
WAG/RijCrl (2020) 
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
LOC108350486
LOC108350486
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
Ralgapa2
Ralgapa2
Ralgapa2
Ralgapa2
Ralgapa2
Ralgapa2
Ralgapa2
Ralgapa2
Ralgapa2
Ralgapa2
Ralgapa2
Ralgapa2
Ralgapa2
Ralgapa2
Ralgapa2
Ralgapa2
Ralgapa2
Ralgapa2
Ralgapa2
Ralgapa2
Ralgapa2
Ralgapa2
Ralgapa2
Ralgapa2
Ralgapa2
Ralgapa2
Ralgapa2
Ralgapa2
Ralgapa2
Ralgapa2
Ralgapa2
Ralgapa2
Ralgapa2
Ralgapa2
Ralgapa2
Ralgapa2
Ralgapa2
Ralgapa2
Ralgapa2
Ralgapa2
Ralgapa2
Ralgapa2
Ralgapa2
Ralgapa2
Ralgapa2
G
4
C
C
G
2
G
A
G
C
T
C
6
G
A
C
T
G
T
C
C
A
T
-
T
A
G
G
2
C
-
G
A
A
G
A
3
T
T
A
C
C
C
T
C
T
T
A
A
T
C
-
-
A
T
G
T
A
G
T
C
A
8
A
-
C
T
C
T
C
A
T
C
T
A
T
-
G
T
-
A
T
C
T
T
-
C
A
T
-
C
-
C
T
10
C
-
C
T
A
A
A
-
C
C
C
G
A
T
C
A
T
A
A
C
C
A
A
A
G
T
A
T
3
G
-
C
2
A
C
T
C
G
A
A
C
G
G
T
C
C
C
T
C
G
-
A
T
T
G
A
T
C
A
A
-
C
T
C
G
A
G
T
G
C
G
C
4
G
G
T
A
T
C
A
G
T
A
G
-
-
G
A
A
G
T
C
T
C
T
G
C
T
T
C
C
G
42
G
7
T
G
T
T
A
A
G
A
A
C
T
G
T
T
T
A
C
4
C
T
T
C
C
13
G
A
T
A
C
A
G
G
T
C
G
G
G
T
A
T
C
T
G
A
T
G
A
A
T
A
G
T
A
A
T
C
C
G
C
G
A
C
C
A
G
G
A
T
C
G
C
T
G
T
T
T
G
G
2
T
G
G
T
T
A
-
-
T
C
C
A
G
A
G
G
C
G
C
C
C
G
G
C
A
-
A
T
G
A
T
C
C
G
T
T
T
A
A
G
T
-
C
A
T
T
C
T
G
A
T
G
C
T
A
G
T
A
A
G
T
T
2
A
A
A
G
C
C
-
A
T
G
A
-
G
A
-
A
C
A
T
C
A
-
T
T
T
G
A
C
A
A
-
C
G
C
T
-
G
C
3
A
C
G
-
T
G
T
C
C
A
C
C
A
T
A
A
A
G
A
-
6
G
G
C
G
A
G
G
G
G
C
-
G
A
C
C
T
T
G
G
G
T
A
C
T
A
C
A
C
A
C
-
-
A
A
G
A
A
6
G
G
C
  133,660,666
  133,660,669
  133,660,676
  133,662,137
  133,665,537
  133,666,133
  133,669,530
  133,669,556
  133,671,494
  133,671,802
  133,671,904
  133,673,639
  133,674,733
  133,675,140
  133,676,489
  133,681,921
  133,686,359
  133,688,962
  133,689,728
  133,690,011
  133,691,392
  133,691,578
  133,691,917
  133,693,512
  133,694,966
  133,697,726
  133,700,023
  133,702,316
  133,705,747
  133,706,620
  133,706,749
  133,707,508
  133,707,698
  133,707,820
  133,708,773
  133,711,449
  133,711,658
  133,712,376
  133,712,934
  133,713,036
  133,713,148
  133,713,303
  133,713,735
  133,713,816
  133,714,297
  133,714,831
  133,714,909
  133,714,911
  133,714,912
  133,714,914
  133,714,918
  133,714,920
  133,714,965
  133,715,280
  133,716,081
  133,716,124
  133,717,699
  133,718,597
  133,719,045
  133,719,301
  133,719,329
  133,721,245
  133,721,963
  133,722,068
  133,722,362
  133,722,647
  133,724,495
  133,724,567
  133,725,261
  133,725,403
  133,725,851
  133,725,866
  133,726,477
  133,727,407
  133,727,524
  133,728,984
  133,730,123
  133,731,545
  133,732,757
  133,733,540
  133,734,207
  133,734,333
  133,734,814
  133,735,069
  133,735,153
  133,735,444
  133,735,453
  133,735,807
  133,735,903
  133,737,365
  133,739,157
  133,739,730
  133,740,302
  133,740,685
  133,741,495
  133,742,432
  133,747,536
  133,747,542
  133,748,739
  133,752,492
  133,752,567
  133,752,571
  133,755,000
  133,757,201
  133,759,360
  133,764,580
  133,767,892
  133,767,946
  133,768,253
  133,768,592
  133,768,596
  133,768,724
  133,769,283
  133,770,043
  133,770,272
  133,771,164
  133,771,803
  133,772,075
  133,772,321
  133,772,612
  133,773,196
  133,774,545
  133,777,327
  133,779,485
  133,782,214
  133,782,283
  133,782,289
  133,782,949
  133,782,984
  133,782,995
  133,783,826
  133,784,659
  133,784,670
  133,785,133
  133,786,306
  133,786,583
  133,788,288
  133,788,409
  133,791,856
  133,792,349
  133,792,361
  133,792,396
  133,792,497
  133,793,438
  133,793,622
  133,794,147
  133,795,855
  133,796,898
  133,797,771
  133,798,331
  133,798,413
  133,799,663
  133,800,254
  133,800,426
  133,802,242
  133,802,902
  133,803,167
  133,804,398
  133,805,634
  133,805,902
  133,806,326
  133,806,489
  133,806,529
  133,806,697
  133,806,734
  133,808,099
  133,808,112
  133,808,256
  133,808,259
  133,808,380
  133,808,533
  133,809,569
  133,810,153
  133,810,635
  133,812,673
  133,813,148
  133,813,808
  133,815,106
  133,815,554
  133,815,575
  133,815,755
  133,816,699
  133,817,524
  133,818,020
  133,818,643
  133,818,647
  133,819,125
  133,819,763
  133,819,843
  133,819,897
  133,820,294
  133,821,199
  133,821,322
  133,822,453
  133,822,752
  133,823,642
  133,824,002
  133,824,080
  133,824,384
  133,824,721
  133,825,256
  133,825,398
  133,826,860
  133,827,988
  133,828,287
  133,828,769
  133,830,361
  133,830,901
  133,830,903
  133,831,529
  133,831,614
  133,831,638
  133,831,711
  133,831,910
  133,832,157
  133,832,408
  133,832,920
  133,832,940
  133,832,941
  133,833,001
  133,833,137
  133,833,342
  133,833,431
  133,833,574
  133,833,589
  133,833,816
  133,834,197
  133,834,309
  133,834,529
  133,834,671
  133,834,944
  133,835,446
  133,836,163
  133,836,227
  133,836,556
  133,836,769
  133,837,750
  133,837,868
  133,838,186
  133,838,593
  133,838,634
  133,838,879
  133,839,369
  133,840,031
  133,840,406
  133,840,521
  133,840,763
  133,840,865
  133,841,136
  133,841,340
  133,842,191
  133,842,246
  133,843,088
  133,843,493
  133,843,545
  133,843,676
  133,843,920
  133,843,960
  133,844,322
  133,844,351
  133,844,744
  133,844,826
  133,844,985
  133,845,762
  133,845,910
  133,846,243
  133,846,419
  133,846,471
  133,847,780
  133,848,290
  133,848,608
  133,849,049
  133,849,801
  133,849,965
  133,853,059
  133,853,273
  133,853,524
  133,853,671
  133,854,086
  133,854,087
  133,854,399
  133,854,768
  133,854,773
  133,854,777
  133,855,763
  133,856,063
  133,856,106
  133,856,532
  133,857,052
  133,857,564
  133,858,169
  133,859,281
  133,859,635
  133,860,214
  133,860,215
  133,861,811
  133,862,582
  133,863,901
  133,864,267
  133,864,374
  133,864,594
  133,864,724
  133,864,899
  133,865,776
  133,865,854
  133,865,885
  133,866,648
  133,866,836
  133,867,647
  133,867,795
  133,867,973
  133,867,975
  133,868,001
  133,868,578
  133,868,836
  133,869,054
  133,870,183
  133,871,179
  133,872,177
  133,873,621
  133,874,084
  133,874,368
  133,875,776
  133,876,021
  133,876,030
  133,877,107
  133,877,207
  133,877,663
  133,877,999
  133,878,511
  133,878,567
  133,879,234
  133,879,628
  133,880,427
  133,880,610
  133,880,814
  133,880,876
  133,880,979
  133,881,419
  133,881,529
  133,883,232
  133,883,669
  133,883,670
  133,883,674
  133,883,676
  133,883,985
  133,885,111
  133,885,288
  133,885,508
  133,885,525
  133,886,151
  133,886,222
  133,888,335
  133,888,868
  133,889,256
  133,891,199
  133,891,336
  133,891,403
  133,891,821
  133,892,284
  133,893,006
  133,894,029
  133,894,367
  133,894,589
  133,894,733
  133,895,118
  133,895,379
  133,898,212
  133,898,500
  133,899,032
  133,900,284
  133,901,258
  133,902,019
  133,902,168
  133,903,228
  133,903,401
  133,904,501
  133,905,072
  133,905,778
  133,907,184
  133,907,271
  133,907,275
  133,907,588
  133,908,453
  133,908,994
  133,908,998
  133,910,680
  133,911,696
  133,912,029
  133,912,402
  133,912,600
  133,912,856
  133,913,268
  133,913,935
  133,913,991
  133,914,380
  133,914,691
  133,914,984
  133,915,531
  133,915,609
  133,915,743
  133,915,822
  133,915,854
  133,915,881
  133,916,071
  133,916,095
  133,916,427
  133,916,430
  133,916,538
  133,917,222
  133,917,242
  133,917,457
  133,918,006
  133,918,243
  133,918,365
  133,918,672
  133,918,796
  133,918,891
  133,918,968
  133,919,124
  133,919,433
  133,920,519
  133,920,695
  133,920,847
  133,921,641
  133,922,149
  133,922,327
  133,922,569
  133,922,603
  133,922,811
  133,923,399
  133,924,077
  133,924,188
  133,924,370
  133,924,567
  133,924,743
  133,925,718
  133,925,781
  133,927,225
  133,927,443
  133,931,507
  133,932,275
  133,938,460
T
-
G
G
-/A
-
A
G
A
T
G
T
-
A
C
T
C
A
C
A
A
T
G
8
G
T
T
-
-
T
5
A
-/G
G
A
G
3/-
A
C
G
A
T
T
C
T
C
C
C
T
C
-
5
A
G
G
C
G
G
C
A
T
G
-
G
T
A
C
T
-
G
T
C
T
-
G
C
22
A
C
2
G
C
T
A
-
G
T
T
-
4
A
2
T
C
-
T
20
-
G
T
-
C
G
T
T
A
A
T
C
T
G
C
C
T/-
T
T
G
G
G
A
A
T
C
-
C
11
A
-
-
A
C
G
C
T
C
T
A
A
G
A/-
A/-
-/T
C
T
T
8
G
G
C
A
-
C
T
-
G
A
T
C
T
A
G
A
G
C
T
A
T
-
-/A
A
C
G
C
G
G
A
C
-
C
2
T
A
G
T
A
-
T
A
A
C
A
T
C
C
T
T
A
-
C
-
C
T
C
C
G
G
T
G
G
T
C
C
C
C
C
G
T
-
-/T
C
C
T
T
-
-
G
C
G
T
G
A
A
C
T
A
A
A
C
G
C
T
-
A
G
C
A
C
G/-
C
G
A
C
G
G
G
G
T
A
A
A
G
T
G
T/T
A
T
G
C
G
C
-
C
A
C
C
C
A
C
-
A/-
T
C/-
C/-
C
G
2
2
C
A
A
G
C/-
T
A
T
T
A
T
T
T
A
A
A
G
G
C
C
A
T
C
-/T
-/T
A
C
A
C
G
G
A
C
AT/G
T
T
-
T/G
G
G
A
T
-
A
T
C
T
-
A
G
G
A
-
A
-
-/G
-/G
G/-
A
G
A
A
G
-/G
A
T
2
A
G
A
T
-/T
G
G
A
G
T
C
C
C
T
G
A
G
G
T
T
A
T
C
T
A
A
-
T
T
A
9
C
A
C
G
T
G
T
T
G
A
-/G
G
C
T
G
2
-
-/A
A
T
A
G
C
A
-
A
A
2
T
A/-
A
A
C
C
-/T
A
C
A
G
T
C
C
T
G
T
G
T
A
C
G
G
A
G
G
-
T
A
T