Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
  Home     Edit Strains     Edit Gene List     Sequence Annotation
 Assembly mRatBN7.2
   

Chromosome Start Position Stop Position
Region Size: 425,042 (bp)   Positions: 411
Genes ( + ) 
Genes ( - ) 
mRatBN7.2  
SHR/OlalpcvMcwi (2019) 
Plxdc2
Plxdc2
Plxdc2
Plxdc2
Plxdc2
Plxdc2
Plxdc2
Plxdc2
Plxdc2
Plxdc2
Plxdc2
Plxdc2
Plxdc2
Plxdc2
Plxdc2
Plxdc2
Plxdc2
Plxdc2
Plxdc2
Plxdc2
Plxdc2
Plxdc2
Plxdc2
Plxdc2
Plxdc2
Plxdc2
Plxdc2
Plxdc2
Plxdc2
Plxdc2
Plxdc2
Plxdc2
Plxdc2
Plxdc2
Plxdc2
Plxdc2
Plxdc2
Plxdc2
Plxdc2
Plxdc2
Plxdc2
Plxdc2
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
G
C
A
G
G
G
A
2
-
T
G
G
G
-
C
A
4
G
-
A
C
G
T
C
C
C
C
G
G
C
A
T
T
G
T
G
T
C
C
C
G
G
T
G
T
C
A
C
-
A
C
A
A
C
A
G
T
T
G
A
C
A
90
A
C
G
C
G
C
A
G
C
T
A
T
C
C
A
-
T
G
T
A
C
T
6
A
2
A
A
C
-
G
C
A
T
C
A
A
C
-
T
T
C
T
C
G
G
A
C
A
G
T
C
T
G
T
C
A
T
T
A
A
A
C
G
A
G
A
T
T
A
G
-
A
C
T
3
G
G
A
T
T
A
A
G
C
A
C
A
A
T
A
T
T
G
C
A
G
T
A
C
G
A
A
-
G
T
A
T
A
A
T
G
T
C
T
T
C
C
A
T
T
A
T
C
C
T
G
A
A
G
G
G
A
A
A
A
-
2
A
A
T
-
G
G
G
-
G
G
C
A
C
C
A
C
A
C
T
-
G
G
2
3
A
G
G
G
4
-
A
C
G
A
A
G
G
T
A
C
T
C
C
A
T
C
G
T
T
T
T
-
T
T
G
G
C
A
G
T
-
T
A
T
G
G
A
C
C
G
T
G
C
C
C
T
G
G
T
G
G
G
T
T
T
A
T
G
-
T
G
G
A
A
A
T
T
2
T
C
A
C
G
A
A
C
A
C
T
-
G
T
G
T
A
A
A
T
A
A
C
T
C
G
G
G
G
C
G
G
G
C
G
G
T
C
A
3
G
-
-
T
T
-
A
-
C
C
G
T
C
T
-
T
T
A
A
G
-
G
T
A
T
T
C
-
G
A
A
A
C
-
-
T
A
A
A
A
G
A
A
G
A
A
T
A
T
20
T
-
T
A
C
G
G
C
T
G
G
A
A
T
A
A
T
C
A
A
A
G
A
  79,169,238
  79,169,270
  79,169,359
  79,169,369
  79,169,419
  79,169,424
  79,169,510
  79,169,571
  79,169,650
  79,169,655
  79,169,667
  79,169,669
  79,169,671
  79,169,733
  79,169,744
  79,169,799
  79,169,807
  79,169,818
  79,169,866
  79,169,903
  79,169,962
  79,169,968
  79,170,039
  79,170,045
  79,170,053
  79,170,082
  79,170,084
  79,170,090
  79,170,131
  79,170,207
  79,170,298
  79,170,361
  79,170,377
  79,170,388
  79,170,475
  79,170,484
  79,170,506
  79,170,522
  79,170,530
  79,170,582
  79,170,644
  79,170,673
  79,170,677
  79,170,687
  79,170,728
  79,170,752
  79,170,760
  79,170,830
  79,170,866
  79,170,868
  79,170,872
  79,171,032
  79,171,179
  79,171,262
  79,171,293
  79,171,345
  79,171,357
  79,171,574
  79,171,593
  79,171,794
  79,171,825
  79,171,831
  79,171,853
  79,171,968
  79,171,996
  79,172,001
  79,172,008
  79,172,027
  79,172,146
  79,172,192
  79,172,200
  79,172,264
  79,172,329
  79,172,407
  79,172,434
  79,172,467
  79,172,482
  79,172,517
  79,172,569
  79,172,700
  79,172,750
  79,172,902
  79,172,992
  79,173,279
  79,173,292
  79,173,305
  79,173,313
  79,173,315
  79,173,327
  79,173,403
  79,173,543
  79,173,564
  79,173,670
  79,173,686
  79,173,783
  79,173,971
  79,174,009
  79,174,181
  79,174,221
  79,174,251
  79,174,256
  79,174,420
  79,174,439
  79,174,494
  79,174,555
  79,174,579
  79,174,724
  79,174,873
  79,174,937
  79,174,952
  79,174,979
  79,174,995
  79,175,069
  79,175,090
  79,175,146
  79,175,214
  79,175,233
  79,175,367
  79,175,576
  79,175,634
  79,175,664
  79,175,705
  79,175,872
  79,175,883
  79,176,161
  79,176,449
  79,176,463
  79,176,464
  79,176,552
  79,176,607
  79,176,616
  79,176,734
  79,176,844
  79,176,849
  79,177,077
  79,177,084
  79,177,240
  79,177,242
  79,177,278
  79,177,348
  79,177,394
  79,177,581
  79,177,594
  79,177,617
  79,177,708
  79,177,759
  79,177,813
  79,177,834
  79,177,866
  79,178,017
  79,178,092
  79,178,133
  79,178,153
  79,178,163
  79,178,197
  79,178,203
  79,178,205
  79,178,219
  79,178,222
  79,178,228
  79,178,229
  79,178,292
  79,178,301
  79,178,311
  79,178,325
  79,178,372
  79,178,385
  79,178,475
  79,178,506
  79,178,590
  79,178,594
  79,178,646
  79,179,935
  79,180,954
  79,181,721
  79,181,727
  79,181,924
  79,182,211
  79,183,037
  79,183,070
  79,183,362
  79,184,409
  79,185,735
  79,188,375
  79,188,701
  79,189,364
  79,189,876
  79,190,026
  79,190,112
  79,190,579
  79,223,227
  79,252,330
  79,258,085
  79,258,093
  79,260,148
  79,260,150
  79,260,152
  79,260,154
  79,286,204
  79,319,875
  79,327,791
  79,327,793
  79,332,460
  79,335,161
  79,385,496
  79,390,205
  79,397,679
  79,424,665
  79,480,520
  79,480,569
  79,480,667
  79,533,553
  79,535,811
  79,536,359
  79,536,696
  79,537,002
  79,537,018
  79,537,185
  79,537,474
  79,537,644
  79,537,902
  79,537,998
  79,538,092
  79,538,271
  79,538,405
  79,538,412
  79,538,504
  79,538,685
  79,539,079
  79,539,136
  79,539,344
  79,539,407
  79,539,429
  79,539,608
  79,539,646
  79,539,661
  79,539,667
  79,539,673
  79,539,722
  79,539,744
  79,539,753
  79,539,958
  79,540,054
  79,540,071
  79,540,209
  79,541,055
  79,541,080
  79,541,132
  79,541,251
  79,541,565
  79,541,770
  79,541,776
  79,541,839
  79,541,849
  79,542,204
  79,542,397
  79,542,404
  79,542,502
  79,542,508
  79,543,009
  79,543,359
  79,543,665
  79,543,697
  79,543,926
  79,544,492
  79,544,684
  79,544,855
  79,544,977
  79,545,143
  79,545,153
  79,545,369
  79,545,544
  79,545,873
  79,545,890
  79,545,927
  79,546,005
  79,546,050
  79,546,081
  79,546,122
  79,546,191
  79,546,275
  79,546,425
  79,546,467
  79,546,870
  79,546,903
  79,546,962
  79,547,197
  79,547,384
  79,547,506
  79,547,509
  79,547,565
  79,547,590
  79,547,672
  79,547,844
  79,547,895
  79,548,554
  79,549,312
  79,549,419
  79,550,121
  79,550,703
  79,550,853
  79,551,204
  79,551,342
  79,551,673
  79,551,698
  79,552,048
  79,552,049
  79,552,184
  79,552,420
  79,552,972
  79,552,975
  79,553,231
  79,553,236
  79,553,354
  79,553,356
  79,554,705
  79,554,742
  79,554,857
  79,554,866
  79,555,222
  79,555,265
  79,555,417
  79,555,518
  79,555,580
  79,555,646
  79,555,648
  79,556,148
  79,556,281
  79,556,350
  79,556,398
  79,556,839
  79,556,877
  79,557,522
  79,557,665
  79,557,678
  79,557,875
  79,557,940
  79,558,008
  79,558,095
  79,558,840
  79,558,883
  79,558,979
  79,559,041
  79,559,189
  79,559,271
  79,559,766
  79,559,931
  79,559,961
  79,560,009
  79,560,016
  79,560,088
  79,560,200
  79,560,571
  79,560,708
  79,560,764
  79,560,796
  79,561,055
  79,561,296
  79,561,314
  79,561,337
  79,562,088
  79,562,164
  79,562,300
  79,562,366
  79,562,380
  79,562,454
  79,562,597
  79,562,639
  79,563,052
  79,563,166
  79,563,411
  79,563,738
  79,563,751
  79,563,879
  79,564,908
  79,564,953
  79,565,610
  79,565,966
  79,569,979
  79,570,934
  79,572,595
  79,572,938
  79,573,336
  79,574,625
  79,574,635
  79,575,346
  79,576,173
  79,578,270
  79,578,556
  79,579,286
  79,579,317
  79,579,424
  79,580,007
  79,580,075
  79,580,183
  79,580,635
  79,580,662
  79,581,379
  79,581,568
  79,582,864
  79,584,482
  79,584,634
  79,584,719
  79,585,421
  79,585,836
  79,586,846
  79,588,487
  79,589,090
  79,589,394
  79,591,454
  79,591,749
A
A
G
C
T
C
G
-
7
A
-/C
-/C
C/-
2
T
T
-
A
10
C
A
T
C
T
T
A
T
A
T
T
G
C
C
A
C
C
A
T
A
T
T
A
A
A
C
T
T
T
2
T
T
G
G
T
T
A
C
C
A
C
A
C
-
G
T
A
T
A
A
G
A
T
C
C
C
T
A
-
4
C
A
A
G
T
C
-
T
-
G
T
T
9
A
T
G
C
T
G
G
T
T
C
A
-
C
T
A
A
G
G
G
T
-
T
C
T
C
-
G
C
G
G
C
T
T
C
C
A
G
C
A
G
A
A
C
A
-
-
A
A
G
G
A
T
G
A
T
G
T
G
G
A
G
G
G
A
T
T
T
A
G
T
A
T/C
C
A
A
G
G
G
G
G
G
-
C
T
C
C
T
T
G
-
A
-
C
T
T
C
A
G
-/T
-/C
G/-
T
C/-
-/C
-/C
C/-
T
2/-
G/-
G/-
-/C
2
A
A
A
-/4
A
-
T
G
G
T
G
T
G
T
A
4
A
A
-
-
G
A
A
A
-
2
G
T
A
G
G
A
C
C
C
T
C
A
A
G
A
T
A
C
A
C
C
10
C
A
A
A
G
T
T
C
A
C
C
C
A
C
G
T
T
C
C
A
G
G
T
-/G
A
A
A
T
T
C
C
C
C
T
C
A
G
A
A
A
G
G
C
C
C
-
-
T
G
A
A
G
C
T
G
G
C
G
T
C
C
C
G
C
G
-
G
C
T
-
T
A
A
A
C
A
T
A
A
A
A
A
C
T
T
-
T
2
T
C
C
A
C
C
-
A
A
C
T
A
A
C
C
G
G
A
4
A
C
G
C
C
T
11
A
-
G
G
G
T
3
C
G
G
-
G
A
C
G
T
T
C
C
G
C
-
A
8
C
-/T
T
T
A
T
C
T
C
G
G
C
G
G
A
A
G
C
G
T
G