Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
  Home     Edit Strains     Edit Gene List     Sequence Annotation
 Assembly mRatBN7.2
   

Chromosome Start Position Stop Position
Region Size: 226,224 (bp)   Positions: 551
Genes ( + ) 
Genes ( - ) 
mRatBN7.2  
M520/N (2020) 
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
LOC120102358
LOC120102358
LOC120102358
LOC120102358
LOC120102358
LOC120102358
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
Pdzrn3
Pdzrn3
Pdzrn3
Pdzrn3
Pdzrn3
Pdzrn3
Pdzrn3
Pdzrn3
Pdzrn3
Pdzrn3
Pdzrn3
Pdzrn3
Pdzrn3
Pdzrn3
Pdzrn3
Pdzrn3
Pdzrn3
Pdzrn3
Pdzrn3
Pdzrn3
Pdzrn3
Pdzrn3
Pdzrn3
Pdzrn3
Pdzrn3
Pdzrn3
Pdzrn3
Pdzrn3
Pdzrn3
Pdzrn3
Pdzrn3
Pdzrn3
Pdzrn3
Pdzrn3
Pdzrn3
Pdzrn3
Pdzrn3
Pdzrn3
Pdzrn3
Pdzrn3
Pdzrn3
Pdzrn3
Pdzrn3
Pdzrn3
Pdzrn3
Pdzrn3
Pdzrn3
Pdzrn3
Pdzrn3
Pdzrn3
Pdzrn3
Pdzrn3
Pdzrn3
Pdzrn3
Pdzrn3
Pdzrn3
C
-
12
T
G
T
C
C
T
C
A
T
T
T
A
3
A
C
C
C
G
G
A
T
G
C
C
G
T
G
T
-
G
G
C
C
A
T
G
G
A
G
C
G
A
A
C
A
C
A
G
T
-
C
G
A
A
G
T
G
T
C
T
G
T
A
C
C
C
G
A
C
G
T
G
C
G
A
C
A
G
-
C
A
5
T
T
C
C
A
T
C
T
G
-
C
A
G
C
A
A
A
T
G
G
C
-
T
A
T
T
G
T
T
-
T
A
T
G
A
G
T
C
-
A
G
A
T
G
A
T
G
T
C
G
C
T
G
T
G
G
A
-
-
-
T
A
G
G
G
G
G
6
G
A
-
G
C
C
C
C
A
C
A
T
C
C
A
C
G
C
G
A
A
C
T
G
C
C
C
C
C
C
A
G
G
C
T
C
G
C
C
G
A
A
T
T
A
T
G
T
G
T
C
T
T
T
C
C
C
A
A
G
A
C
A
C
T
-
C
A
A
G
T
A
A
C
C
C
C
T
T
A
T
G
T
T
G
C
A
-
2
A
C
C
C
A
C
T
T
A
G
G
T
T
T
T
G
A
G
A
T
C
C
T
C
C
T
A
C
T
A
G
G
G
T
A
T
A
T
112
T
A
C
T
G
T
A
T
T
-
C
A
C
A
G
C
G
C
C
T
G
G
A
A
A
A
A
G
T
G
C
A
T
G
A
G
A
T
A
G
G
G
G
G
A
-
-
G
G
C
T
-
C
A
C
C
T
A
G
A
A
A
-
A
A
C
A
A
A
2
G
T
G
G
A
C
C
A
C
A
12
G
A
A
T
G
C
-
A
A
A
A
C
-
A
G
G
C
T
T
T
G
C
A
A
C
A
T
G
A
T
A
T
C
G
G
C
C
G
G
C
T
T
C
G
A
C
A
G
A
C
A
T
C
-
-
G
A
-
T
A
T
-
G
G
-
C
A
G
G
G
T
C
A
C
A
A
G
G
G
G
G
G
G
G
G
G
G
G
6
C
A
A
A
C
A
T
T
G
C
G
A
A
T
T
C
C
C
G
10
-
A
T
C
3
3
T
T
C
C
A
C
G
3
-
T
G
C
C
G
A
G
T
C
T
G
-
C
C
G
T
A
C
A
T
G
C
6
-
A
T
C
C
T
C
C
2
T
T
C
C
C
T
C
T
C
A
T
T
A
A
T
C
A
2
G
G
A
G
G
G
4
T
A
A
G
C
G
T
C
  133,772,960
  133,773,442
  133,773,554
  133,773,641
  133,774,226
  133,778,095
  133,778,625
  133,780,577
  133,781,870
  133,781,878
  133,781,988
  133,782,071
  133,782,388
  133,783,322
  133,783,556
  133,783,645
  133,783,957
  133,785,208
  133,788,244
  133,789,122
  133,789,764
  133,791,458
  133,791,659
  133,794,326
  133,796,286
  133,797,387
  133,797,577
  133,797,835
  133,798,361
  133,798,492
  133,800,693
  133,800,875
  133,801,937
  133,802,842
  133,803,125
  133,803,662
  133,805,293
  133,805,932
  133,807,000
  133,808,157
  133,808,368
  133,808,602
  133,809,500
  133,811,079
  133,813,676
  133,816,715
  133,817,307
  133,820,359
  133,820,613
  133,821,108
  133,821,171
  133,821,174
  133,821,324
  133,821,717
  133,821,854
  133,821,912
  133,822,286
  133,822,334
  133,822,409
  133,822,732
  133,822,964
  133,823,404
  133,823,823
  133,824,107
  133,824,196
  133,824,198
  133,824,247
  133,824,281
  133,824,341
  133,825,181
  133,825,380
  133,825,878
  133,826,122
  133,826,548
  133,826,873
  133,827,273
  133,827,550
  133,827,609
  133,827,758
  133,828,050
  133,828,139
  133,828,740
  133,828,875
  133,829,025
  133,829,029
  133,829,986
  133,830,882
  133,831,037
  133,831,445
  133,831,987
  133,832,048
  133,832,054
  133,832,730
  133,832,938
  133,834,725
  133,834,987
  133,835,305
  133,837,489
  133,837,758
  133,838,047
  133,838,933
  133,839,165
  133,839,826
  133,839,836
  133,839,837
  133,839,978
  133,841,189
  133,841,715
  133,841,777
  133,842,353
  133,843,144
  133,843,361
  133,843,400
  133,845,090
  133,845,394
  133,845,458
  133,845,551
  133,845,716
  133,845,747
  133,845,761
  133,845,863
  133,845,880
  133,845,981
  133,846,392
  133,846,551
  133,847,016
  133,848,013
  133,848,124
  133,848,632
  133,849,076
  133,849,851
  133,850,021
  133,850,196
  133,850,296
  133,850,370
  133,850,437
  133,850,726
  133,850,780
  133,850,861
  133,851,159
  133,852,223
  133,852,575
  133,852,587
  133,852,863
  133,853,096
  133,853,113
  133,853,398
  133,853,462
  133,853,734
  133,854,259
  133,854,315
  133,854,340
  133,854,358
  133,854,377
  133,854,418
  133,854,511
  133,854,548
  133,854,561
  133,854,740
  133,854,897
  133,855,019
  133,855,261
  133,855,381
  133,855,444
  133,855,445
  133,855,472
  133,856,339
  133,856,470
  133,856,496
  133,856,945
  133,857,600
  133,857,788
  133,858,009
  133,858,518
  133,859,162
  133,859,766
  133,860,237
  133,860,367
  133,860,372
  133,860,374
  133,860,396
  133,861,854
  133,862,193
  133,863,367
  133,863,624
  133,864,772
  133,864,912
  133,865,686
  133,865,826
  133,865,908
  133,866,214
  133,866,786
  133,867,308
  133,867,493
  133,867,710
  133,868,398
  133,868,426
  133,868,467
  133,868,504
  133,868,879
  133,869,244
  133,869,383
  133,869,528
  133,869,556
  133,869,583
  133,869,584
  133,869,585
  133,869,889
  133,870,658
  133,871,051
  133,871,697
  133,873,118
  133,873,361
  133,874,033
  133,874,041
  133,874,072
  133,874,098
  133,874,772
  133,874,984
  133,875,095
  133,875,243
  133,875,318
  133,875,582
  133,875,606
  133,876,310
  133,876,809
  133,876,810
  133,876,865
  133,877,120
  133,877,230
  133,877,803
  133,878,099
  133,878,281
  133,878,677
  133,878,829
  133,878,853
  133,879,270
  133,879,759
  133,879,840
  133,879,855
  133,880,586
  133,881,406
  133,882,082
  133,882,156
  133,882,182
  133,882,406
  133,882,606
  133,883,011
  133,883,597
  133,884,121
  133,884,501
  133,884,634
  133,885,183
  133,885,275
  133,885,619
  133,886,049
  133,886,158
  133,886,651
  133,886,976
  133,887,062
  133,887,185
  133,887,273
  133,887,445
  133,887,902
  133,889,577
  133,889,913
  133,890,049
  133,890,255
  133,890,732
  133,890,753
  133,891,035
  133,891,099
  133,891,189
  133,891,224
  133,891,229
  133,891,350
  133,891,481
  133,891,664
  133,891,832
  133,891,926
  133,892,058
  133,892,060
  133,892,094
  133,892,096
  133,892,199
  133,892,680
  133,892,825
  133,893,806
  133,894,615
  133,895,242
  133,895,465
  133,895,794
  133,896,612
  133,896,877
  133,898,756
  133,899,567
  133,900,027
  133,900,322
  133,900,750
  133,900,787
  133,900,807
  133,900,953
  133,901,077
  133,901,085
  133,901,134
  133,901,340
  133,901,611
  133,901,796
  133,902,117
  133,902,161
  133,902,167
  133,902,183
  133,902,389
  133,902,601
  133,902,917
  133,902,920
  133,902,967
  133,903,203
  133,903,461
  133,903,885
  133,903,886
  133,903,889
  133,903,924
  133,903,932
  133,904,112
  133,904,140
  133,904,174
  133,904,216
  133,904,353
  133,904,412
  133,904,413
  133,904,486
  133,904,584
  133,904,753
  133,904,806
  133,905,412
  133,905,634
  133,905,690
  133,905,866
  133,906,124
  133,906,391
  133,906,413
  133,906,459
  133,906,484
  133,906,661
  133,907,004
  133,907,271
  133,907,354
  133,907,433
  133,907,536
  133,907,541
  133,907,609
  133,907,707
  133,908,373
  133,908,443
  133,908,577
  133,908,697
  133,908,720
  133,908,941
  133,909,134
  133,909,172
  133,909,178
  133,909,215
  133,909,340
  133,909,362
  133,909,947
  133,910,171
  133,910,577
  133,910,599
  133,910,731
  133,911,375
  133,911,629
  133,911,647
  133,911,665
  133,912,205
  133,912,631
  133,912,683
  133,912,890
  133,912,952
  133,913,548
  133,913,847
  133,913,975
  133,914,026
  133,914,059
  133,914,351
  133,914,373
  133,914,442
  133,914,508
  133,914,993
  133,915,044
  133,915,066
  133,915,346
  133,915,372
  133,915,419
  133,915,439
  133,915,507
  133,915,806
  133,916,021
  133,916,271
  133,916,982
  133,916,988
  133,917,003
  133,917,005
  133,917,008
  133,917,574
  133,918,190
  133,918,317
  133,918,601
  133,918,621
  133,918,650
  133,919,120
  133,920,843
  133,921,814
  133,922,595
  133,922,931
  133,923,998
  133,924,000
  133,924,170
  133,925,147
  133,931,837
  133,932,477
  133,932,954
  133,933,494
  133,933,844
  133,934,226
  133,934,258
  133,934,308
  133,934,451
  133,934,799
  133,934,873
  133,934,896
  133,935,115
  133,935,221
  133,935,239
  133,935,249
  133,935,309
  133,935,380
  133,935,827
  133,936,056
  133,936,060
  133,936,062
  133,936,064
  133,936,066
  133,936,068
  133,936,070
  133,936,072
  133,936,074
  133,936,078
  133,936,080
  133,936,082
  133,936,087
  133,936,092
  133,936,291
  133,936,372
  133,936,386
  133,936,527
  133,936,641
  133,936,791
  133,937,316
  133,937,645
  133,937,705
  133,938,338
  133,938,479
  133,938,616
  133,938,777
  133,939,055
  133,939,388
  133,939,482
  133,939,567
  133,939,661
  133,939,773
  133,939,849
  133,939,931
  133,940,389
  133,940,465
  133,940,667
  133,941,208
  133,941,958
  133,942,352
  133,943,957
  133,946,153
  133,946,362
  133,947,070
  133,947,611
  133,948,179
  133,950,658
  133,952,614
  133,953,086
  133,953,321
  133,955,433
  133,955,615
  133,955,764
  133,957,207
  133,957,560
  133,958,539
  133,959,526
  133,960,650
  133,961,288
  133,961,417
  133,963,223
  133,966,457
  133,967,491
  133,967,741
  133,968,142
  133,969,545
  133,969,905
  133,972,364
  133,972,392
  133,972,434
  133,974,116
  133,974,370
  133,975,475
  133,976,725
  133,976,832
  133,976,833
  133,977,533
  133,977,692
  133,978,628
  133,978,867
  133,979,163
  133,979,898
  133,981,786
  133,983,792
  133,983,935
  133,984,625
  133,984,905
  133,985,400
  133,985,980
  133,986,734
  133,986,771
  133,987,380
  133,988,482
  133,988,693
  133,988,811
  133,989,936
  133,990,220
  133,993,032
  133,993,176
  133,993,236
  133,993,958
  133,993,963
  133,994,115
  133,994,123
  133,994,125
  133,994,913
  133,994,915
  133,995,179
  133,995,660
  133,995,728
  133,995,795
  133,995,990
A
T
-
G
C
C
G
T
C
G
G
G
C
G
G
-
G
T
T
T
T
A
C
C
A
T
T
T
C
C
C
C
A
-/T
T
T
G
C
A
A
-
C
G
A
-
T
G
G
A
G
A
C
4
A
-
G
G
A
C
T
C
T
C
A
C
C
T
T
T
T
-
T
A
G
A
T
T
G
T
T
T
A
T
T
-
C
-
T
T
C
C
A
C
A
7
T
G
C
T
G
C
G
-
A
T
T
2
A
G
G
C
A
C
C
A
C
G
G
A
G
A
C
A
T
G
A
G
C
A
G
C
C
C
T
-
T
C
A
G
A
A
G
2
A
A
G
G
A
A
A
A
T
-
A
T
A
A
T
T
T
T
G
T
G
G
T
T
T
T
-
G
A
G
C
T
C
A
A/-
A
T
T
T
T
G
A
-
T
A
T
A
T
T
A
G
C
C
C
G
C
A
C
C
C
G
C/-
C/-
C/-
A
T
G
G
G
A
G
T
G
T
C
-/2
G
G
G
A
C
G
-/G
-/T
T
T
T
C
C
G
C
C
G
A
A
G
G
G
-
-
A
T
T
G
T
C
C
G
T
A
C
G
C
C
A
-
A
G
C
T
T
C
T
T
C
G
T
C
-
A
-/C
T
C
G
C
G
C
-
-/C
T/-
T/-
C
A
C
G
C
C
2
T
G
T
C
A
?
A
T
T
C
A
A
G
G
T
G
G
A
G
A
T
G
C
A
T
T
T
C
C
A
A
T
T
A
G
C
6
-
C
A
C
2
T
G
G
T
-
G
T
G
C
G
G
G
G
T
T
G
C
-
C
C
T
A
G
T
T
G
T
G/-
-
C
G
G
C
A
G
3
C
G
G
G
G
A
G
C
C
T
C
C
C
A
T
G
G
T
G
-/C
A
G
C
G
C
T
A
-
T
T
C
C
-/G
-/G
-/G
T
A
T
T
G
T
T
T
G
C
T
C
3
A
G
4
C
C
C
A
A
A
6
T
C
A
A
A
C
T
T
T
T
-
C/-
C/-
C/-
-/C
C
C
C
C
C
C
C
C
-
G/-
G
T
G
T
T
C
C
A
T
A
G
C
C
C
A
T
G
A
-
4
G
C
T
-
-
C
C
A
T
G
A/-
A
-
T
C
-
T
T
A
G
T
C
A
G
A
-/T
T
T
A
C
T
A
T
C
A
T
-
10
T
C
T
T
C
T
-/T
-
C
G
T
T
T
C
T
C
A
G
C
G
T
G
C
A
G
-
A
T
G
A
A
A
-
A/-
T
-/T
C
T
A
A
T