Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
  Home     Edit Strains     Edit Gene List     Sequence Annotation
 Assembly mRatBN7.2
   

Chromosome Start Position Stop Position
Region Size: 119,861 (bp)   Positions: 226
Genes ( + ) 
Genes ( - ) 
mRatBN7.2  
GK/FarMcwi (2019) 
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
LOC108352538
LOC108352538
LOC108352538
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
Nr5a2
Nr5a2
Nr5a2
Nr5a2
Nr5a2
Nr5a2
Nr5a2
Nr5a2
Nr5a2
Nr5a2
Nr5a2
Nr5a2
Nr5a2
Nr5a2
Nr5a2
Nr5a2
Nr5a2
Nr5a2
Nr5a2
Nr5a2
Nr5a2
Nr5a2
Nr5a2
T
C
T
A
-
G
T
A
C
A
G
T
2
73
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
T
T
G
C
A
-
C
G
G
A
C
G
C
C
C
A
T
G
C
G
T
A
G
G
A
G
A
-
G
G
T
G
A
T
A
G
C
G
T
G
T
T
T
A
T
T
C
2
G
A
G
C
G
-
A
G
-
G
A
C
G
G
G
C
-
G
-
-
C
C
C
G
-
T
A
4
T
G
T
T
A
-
G
2
T
-
T
C
T
-
G
G
T
-
T
-
T
G
G
G
A
3
A
T
-
G
-
C
G
G
G
-
T
G
G
G
T
T
3
G
A
G
2
A
A
-
14
G
G
2
6
-
-
-
G
A
T
3
A
G
T
A
C
-
2
C
A
T
-
G
T
G
C
G
A
C
A
A
C
G
-
A
T
-
G
C
T
A
C
C
T
G
10
A
C
C
T
T
-
C
T
G
C
G
A
-
C
-
G
  48,313,903
  48,314,008
  48,314,922
  48,315,695
  48,316,394
  48,317,961
  48,318,804
  48,318,985
  48,319,121
  48,319,211
  48,320,208
  48,323,179
  48,323,354
  48,323,357
  48,323,359
  48,323,364
  48,323,369
  48,323,374
  48,323,379
  48,323,384
  48,323,389
  48,323,394
  48,323,399
  48,323,404
  48,323,409
  48,323,414
  48,323,434
  48,323,439
  48,323,444
  48,323,449
  48,323,454
  48,323,459
  48,323,464
  48,323,469
  48,323,474
  48,323,479
  48,323,484
  48,324,172
  48,324,579
  48,326,073
  48,330,286
  48,330,563
  48,331,430
  48,334,593
  48,336,543
  48,341,061
  48,342,070
  48,343,013
  48,345,249
  48,345,511
  48,346,392
  48,346,732
  48,347,995
  48,349,768
  48,350,536
  48,351,073
  48,351,082
  48,353,036
  48,354,502
  48,355,070
  48,355,544
  48,355,811
  48,356,298
  48,356,642
  48,356,728
  48,357,681
  48,357,863
  48,358,091
  48,358,378
  48,358,455
  48,358,543
  48,359,007
  48,359,354
  48,359,639
  48,359,792
  48,360,784
  48,361,110
  48,361,523
  48,362,658
  48,364,039
  48,364,144
  48,365,587
  48,366,385
  48,367,477
  48,368,394
  48,368,503
  48,368,818
  48,368,819
  48,369,116
  48,369,597
  48,369,932
  48,370,112
  48,370,888
  48,371,299
  48,373,524
  48,373,681
  48,374,010
  48,374,619
  48,374,621
  48,374,812
  48,376,423
  48,379,121
  48,379,122
  48,379,125
  48,380,122
  48,380,177
  48,380,179
  48,380,181
  48,380,407
  48,380,411
  48,380,493
  48,380,739
  48,381,879
  48,382,262
  48,383,527
  48,385,097
  48,385,857
  48,388,199
  48,388,523
  48,388,816
  48,389,359
  48,389,569
  48,389,646
  48,389,717
  48,389,879
  48,390,090
  48,390,712
  48,390,725
  48,391,669
  48,391,990
  48,393,435
  48,393,809
  48,394,520
  48,395,982
  48,396,528
  48,396,530
  48,396,532
  48,398,462
  48,399,298
  48,399,835
  48,400,475
  48,400,729
  48,401,128
  48,401,309
  48,401,987
  48,402,291
  48,402,934
  48,403,384
  48,405,035
  48,405,242
  48,407,168
  48,407,269
  48,407,739
  48,408,283
  48,408,319
  48,409,780
  48,410,064
  48,410,345
  48,410,357
  48,410,593
  48,410,638
  48,410,640
  48,410,652
  48,410,802
  48,410,894
  48,411,123
  48,411,148
  48,411,230
  48,411,378
  48,411,999
  48,412,365
  48,412,547
  48,412,771
  48,412,834
  48,413,123
  48,413,126
  48,413,224
  48,413,303
  48,413,520
  48,413,960
  48,414,694
  48,415,004
  48,415,062
  48,415,414
  48,415,556
  48,415,570
  48,416,337
  48,416,415
  48,416,416
  48,416,553
  48,416,971
  48,417,154
  48,417,190
  48,417,435
  48,417,694
  48,417,843
  48,417,936
  48,418,170
  48,418,183
  48,418,270
  48,418,808
  48,418,881
  48,419,599
  48,419,605
  48,420,795
  48,421,463
  48,422,125
  48,424,816
  48,424,997
  48,425,185
  48,425,256
  48,425,760
  48,426,354
  48,426,357
  48,426,898
  48,426,903
  48,427,124
  48,427,285
  48,427,320
  48,427,786
  48,428,340
  48,428,834
  48,430,429
  48,431,245
  48,432,512
  48,432,813
C
G
-
G
3
C
C
G
T
G
A
C
?
-
T/-
T/-
T/-
T/-
-/T
T/-
-/T
-/T
T/-
T/-
-/T
-/T
T/-
-/T
T/-
-/T
T/-
T
T
T
T
T
T
C
C
A
T
G
4
T
T
A
G
T
A
T
T
G
G
G
A
-
A
G
G
A
A
G
A
G
2
A
A
A
C
G
A
G
A
T
C
G
T
C
C
C
G
-
C
T
-
A
T
C
T
A
T
-
-
G
A
G
T
A/-
A/-
A
T
15
A
16
2
T
T
T
-
6
G
G
-
C
C
C
C
G
A
A
-
C
6
A
T
C
10
A
A
C
9
A
2
G
-/T
-/T
T
C
-
G
C
T
T
10
T
A
A
A
G
C
A/-
A
A
C
G
-
A
G
A
-
G
T
A
-
-/C
C
-
-
3
T
4
A
G
C
-
G
A
C
G
A
3
-
T
G
C
G
A
C
T
T
A
G
A
T
T
T
A
A
G
G
2
A
T
G
G
-
A
C/-
A
-
G
T
T
C
G
22
G
C
A
T
-
G/-
T
T
A
-/C